; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G008320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G008320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionrRNA-processing protein UTP23 homolog
Genome locationchr09:9547449..9552247
RNA-Seq ExpressionLsi09G008320
SyntenyLsi09G008320
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR006984 - rRNA-processing protein Fcf1/Utp23
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143766.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus]2.3e-7088.51Show/hide
Query:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA
        PPFKIFCDGTFV+HLLSNQIMPAD+A+AKTVGDRVKLFTTRCV LEL+ALGQSY+GAF+AA+QLFTARC+HEKRKSAEACI+DVIGESNPEHFFVATQD 
Subjt:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM
        NLR QLQQIPGVPLI+GLRNALF+EQPSDVQR+FVKSLEE+RMHVSE+
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM

XP_008465424.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo]1.9e-6987.76Show/hide
Query:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA
        PPFKIFCDGTFV+HLLSNQIMPAD+A+AKTVGDRVKLFTTRCV LEL+ALGQSY GAF+AA+QLFTARC+HEKRKSAEACI+DVIGESNPEHFFVATQD 
Subjt:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE
        NLR QLQQIPGVPLI+GLRN LF+EQPSDVQR+FVKSLEE+RMH+SE
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE

XP_011655276.1 rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus]2.3e-7088.51Show/hide
Query:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA
        PPFKIFCDGTFV+HLLSNQIMPAD+A+AKTVGDRVKLFTTRCV LEL+ALGQSY+GAF+AA+QLFTARC+HEKRKSAEACI+DVIGESNPEHFFVATQD 
Subjt:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM
        NLR QLQQIPGVPLI+GLRNALF+EQPSDVQR+FVKSLEE+RMHVSE+
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM

XP_038906639.1 rRNA-processing protein UTP23 homolog isoform X1 [Benincasa hispida]1.6e-6887.76Show/hide
Query:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA
        PPFKIF DGTFVHHL+SNQIMPADDAIAKTVGD+VKLFT+RCVRLELRALGQSY+  F+AANQLFTARCNH +RKSAEACI DVIGESNPEHFF+ATQDA
Subjt:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE
        NLR QL++IPGVPLIYGLRNALF+EQPSDVQR+FVKSLEEERMH+SE
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE

XP_038906640.1 rRNA-processing protein UTP23 homolog isoform X2 [Benincasa hispida]1.6e-6887.76Show/hide
Query:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA
        PPFKIF DGTFVHHL+SNQIMPADDAIAKTVGD+VKLFT+RCVRLELRALGQSY+  F+AANQLFTARCNH +RKSAEACI DVIGESNPEHFF+ATQDA
Subjt:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE
        NLR QL++IPGVPLIYGLRNALF+EQPSDVQR+FVKSLEEERMH+SE
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE

TrEMBL top hitse value%identityAlignment
A0A0A0KTT8 Uncharacterized protein6.3e-5887.5Show/hide
Query:  MPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDANLRNQLQQIPGVPLIYGLRN
        MPAD+A+AKTVGDRVKLFTTRCV LEL+ALGQSY+GAF+AA+QLFTARC+HEKRKSAEACI+DVIGESNPEHFFVATQD NLR QLQQIPGVPLI+GLRN
Subjt:  MPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDANLRNQLQQIPGVPLIYGLRN

Query:  ALFIEQPSDVQRKFVKSLEEERMHVSEM
        ALF+EQPSDVQR+FVKSLEE+RMHVSE+
Subjt:  ALFIEQPSDVQRKFVKSLEEERMHVSEM

A0A1S3CNY6 rRNA-processing protein UTP23 homolog9.3e-7087.76Show/hide
Query:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA
        PPFKIFCDGTFV+HLLSNQIMPAD+A+AKTVGDRVKLFTTRCV LEL+ALGQSY GAF+AA+QLFTARC+HEKRKSAEACI+DVIGESNPEHFFVATQD 
Subjt:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE
        NLR QLQQIPGVPLI+GLRN LF+EQPSDVQR+FVKSLEE+RMH+SE
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE

A0A6J1CLD6 rRNA-processing protein UTP23 homolog7.4e-5974.83Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN
        PFK+ CDGTFVHHLLSN+I+PAD+A+AKT+G  +KLFTTRCV  EL+ALGQSY+ AFDAA++L  ARC+HE+RKSAEACI DVIGESN EHFFVATQD +
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN

Query:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM
        LR +LQ+IPGVPL+YGLRNALF+EQPS +QR+FVKS EEER+H+SE+
Subjt:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM

A0A6J1JRB3 rRNA-processing protein UTP23 homolog isoform X23.2e-5470.07Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN
        PFK+ CDGTFVHHLLSNQI+PAD A+AK +G RVK+FTTRCV LEL+ALG SY+ AF+AA+ L TARC+HE RK A  CI++VIG+SN EHFFVATQD +
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN

Query:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM
        L+ QLQ+IPGVPLI+GLRNALF+EQP+ ++R+FVKS EE+R H+SE+
Subjt:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM

A0A6J1JT87 rRNA-processing protein UTP23 homolog isoform X13.2e-5470.07Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN
        PFK+ CDGTFVHHLLSNQI+PAD A+AK +G RVK+FTTRCV LEL+ALG SY+ AF+AA+ L TARC+HE RK A  CI++VIG+SN EHFFVATQD +
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN

Query:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM
        L+ QLQ+IPGVPLI+GLRNALF+EQP+ ++R+FVKS EE+R H+SE+
Subjt:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEM

SwissProt top hitse value%identityAlignment
O74862 rRNA-processing protein utp232.7e-1032.31Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNH-EKRKSAEACIIDV--IGESNPEHFFVATQ
        P+++  D  F+   LS Q +    A+A+TV   +K   T+C   +L +           A      RC H ++  S   CI  V  I   N   + VATQ
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNH-EKRKSAEACIIDV--IGESNPEHFFVATQ

Query:  DANLRNQLQQIPGVPLIYGLRNALFIEQPS
        D  LR  L+ +PGVPLIY  R+ + +E  S
Subjt:  DANLRNQLQQIPGVPLIYGLRNALFIEQPS

Q08DU1 rRNA-processing protein UTP23 homolog6.1e-1832.87Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVATQDA
        P++I  DGTF    L  +I    + + + +    +L TTRCV  EL  LG+   GA   A +     C H K   S   C++ ++ + NP H+F+ATQD 
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERM
        NL  ++++ PG+PL++ ++N + +++PS     FVK++E  ++
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERM

Q12339 rRNA-processing protein UTP239.4e-1131.08Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYT-GAFDAANQLFTARCNHEKR--KSAEACIIDVIGES--NPEHFFVA
        P+++  D   V    +N        + +T+   VK+  T+C    ++AL ++   GA + A Q    RCNH  +  KS   CI  V+  S  N   + VA
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYT-GAFDAANQLFTARCNHEKR--KSAEACIIDVIGES--NPEHFFVA

Query:  TQDANLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMH
        +QD +LR +L+ +PGVPLI+  R+ + +E  S    K  K  EE++++
Subjt:  TQDANLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMH

Q9BRU9 rRNA-processing protein UTP23 homolog4.2e-1935.66Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVATQDA
        P++I  DGTF    L  +I   +      +G+  +L TTRCV  EL  LG+   GA   A +     C H K   S   C++ ++ E NP H+FVATQD 
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERM
        NL  ++++ PGVPL++ ++N + +++PS     FVK++E  ++
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERM

Q9CX11 rRNA-processing protein UTP23 homolog1.1e-1936.69Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVATQDA
        P++I  DGTF    L  +I   D      +G+  +L TTRCV  EL  LG+   GA   A +     C H K   S   C++ ++ E NP H+FVATQD 
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRK-SAEACIIDVIGESNPEHFFVATQDA

Query:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLE
        NL  ++++ PG+PL++ ++N + +++PS     FVK++E
Subjt:  NLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLE

Arabidopsis top hitse value%identityAlignment
AT2G34570.1 PIN domain-like family protein1.1e-4152.05Show/hide
Query:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN
        P+K+ CDGTFVHHL++N+I PAD A+++ +G  VKLFTTRCV  EL  LG+ +  + +AA  L TA C HE+ K+A+ C+ +VIG  N EHFF+ TQDA 
Subjt:  PFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDAN

Query:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE
         R +LQQ   VPL++GLRN L I+QPSD QR+  K  E +R+ +++
Subjt:  LRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSE

AT2G46230.1 PIN domain-like family protein5.3e-0929.69Show/hide
Query:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTAR--CNHEKRKSAEACIIDVIGESNPEHFFVATQ
        PP+++  D  F++  + N+I   +  +   +        T CV  EL  LGQ Y  A   A      R  C H K   A+ C++D +  +  + F VAT 
Subjt:  PPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAANQLFTAR--CNHEKRKSAEACIIDVIGESNPEHFFVATQ

Query:  DANLRNQLQQIPGVPLIYGLRNALFIEQ
        D +L+ ++++IPGVP++Y       IE+
Subjt:  DANLRNQLQQIPGVPLIYGLRNALFIEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTACCCTCAAGAACAAATCCAGTAGAGACGAGGTGGGACCCTGTAGCCCAGAGGATTAGAGCACGTATGAACTACGATATCTGTGGTTCGAATCCCTCCTCGCCCACAAT
CGGCAAAAAAGGGAAGGACTTTTCCCTTAAGGGGCCACCATTTAAAATCTTTTGTGATGGAACTTTTGTGCACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGATG
CCATTGCTAAAACTGTTGGAGACAGAGTAAAGCTTTTCACCACCAGATGTGTACGCTTAGAGTTGAGAGCTCTTGGCCAATCTTACACTGGAGCTTTTGACGCAGCTAAT
CAGCTGTTCACTGCGAGATGCAACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATCATTGATGTGATTGGTGAATCAAATCCTGAGCATTTCTTTGTTGCCACTCAAGA
TGCTAATCTTAGGAATCAGCTTCAACAGATACCTGGGGTCCCACTCATATATGGTTTGAGAAATGCACTTTTCATAGAGCAACCATCTGATGTGCAGCGAAAGTTTGTTA
AGTCTTTAGAAGAAGAAAGAATGCACGTGTCTGAGATGGTGCACTTTTCATAG
mRNA sequenceShow/hide mRNA sequence
GTACCCTCAAGAACAAATCCAGTAGAGACGAGGTGGGACCCTGTAGCCCAGAGGATTAGAGCACGTATGAACTACGATATCTGTGGTTCGAATCCCTCCTCGCCCACAAT
CGGCAAAAAAGGGAAGGACTTTTCCCTTAAGGGGCCACCATTTAAAATCTTTTGTGATGGAACTTTTGTGCACCATCTTCTCTCCAATCAGATAATGCCGGCTGATGATG
CCATTGCTAAAACTGTTGGAGACAGAGTAAAGCTTTTCACCACCAGATGTGTACGCTTAGAGTTGAGAGCTCTTGGCCAATCTTACACTGGAGCTTTTGACGCAGCTAAT
CAGCTGTTCACTGCGAGATGCAACCATGAAAAAAGAAAGAGTGCTGAGGCATGCATCATTGATGTGATTGGTGAATCAAATCCTGAGCATTTCTTTGTTGCCACTCAAGA
TGCTAATCTTAGGAATCAGCTTCAACAGATACCTGGGGTCCCACTCATATATGGTTTGAGAAATGCACTTTTCATAGAGCAACCATCTGATGTGCAGCGAAAGTTTGTTA
AGTCTTTAGAAGAAGAAAGAATGCACGTGTCTGAGATGGTGCACTTTTCATAGAGCAACCATCTGACGTGCAGCGAAAGTTTGTTAAGTCTTTAGAAGAAGAAAGAATGC
ACGTGTGAACATAGTTTATTGAAGGGAAAAATGAAGTATGAAGTGGAAGCTGAGAAAACTAATGGAGATGAAGATTTGGGAGATCAAAATTTAGACACACAAGTTTTGAA
AAAGAAAAAGAAAAGCATTCCAAATAATTTGAAAGACAGACCTCAATGTAAGAGAAACAAAGCAAAGGGTCCAAGCCCTCTTTCATGTTTGAAGAAAAAGGTCAAACCAA
GCCCACATCCAGTTTAATACTCTATTCTAGAATAAGCTAATCGATCATAATGAGTTTTTAGTCTATGAAATGTTCTTCAAAATTCATGTCCTACTCTAAGGAAATCTTAA
CATACTCATTACTCATTCTAATTGAGTTGTTCTTTCTCTTATGCACTAAAAGAAGAATGATGGTGATACGTCGCGAAAGGCCAAACGCCAAAAGAGACGGAGACGGAGA
Protein sequenceShow/hide protein sequence
VPSRTNPVETRWDPVAQRIRARMNYDICGSNPSSPTIGKKGKDFSLKGPPFKIFCDGTFVHHLLSNQIMPADDAIAKTVGDRVKLFTTRCVRLELRALGQSYTGAFDAAN
QLFTARCNHEKRKSAEACIIDVIGESNPEHFFVATQDANLRNQLQQIPGVPLIYGLRNALFIEQPSDVQRKFVKSLEEERMHVSEMVHFS