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Lsi09G008370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G008370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S27
Genome locationchr09:9630247..9631866
RNA-Seq ExpressionLsi09G008370
SyntenyLsi09G008370
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG1853313.1 unnamed protein product [Musa acuminata subsp. malaccensis]4.3e-1241.22Show/hide
Query:  DLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDASTLPL
        D  VL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFM   C  CF           N++TV S S                                   
Subjt:  DLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDASTLPL

Query:  SSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVIDDAVRCFFL
             +LLW+A TAR   AS+   V+ SPR  LS E+ I+     FFL
Subjt:  SSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVIDDAVRCFFL

KAG7575029.1 hypothetical protein ISN44_As09g031700 [Arabidopsis suecica]1.4e-1040.88Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDASTLPLSSAT
        VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMV                      L   F                     + S+ + A TL   SAT
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDASTLPLSSAT

Query:  LKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVIDD
        L+ LW   TAR  +A   E+ + S +  LS +R  ++
Subjt:  LKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVIDD

PNX67664.1 40S ribosomal protein s27-2-like, partial [Trifolium pratense]3.1e-1090.7Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMV-FFCFCFN
        VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMV F CF  N
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMV-FFCFCFN

RXH79955.1 hypothetical protein DVH24_041102 [Malus domestica]1.7e-1142.66Show/hide
Query:  LLCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDAST
        + C   VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM   C  CF                 S   +C+                            
Subjt:  LLCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDAST

Query:  LPLSSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVID
         P  S T K LW AVTARR  AS  EDV  SP+   S ER  D
Subjt:  LPLSSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVID

RYR54172.1 hypothetical protein Ahy_A06g029426 [Arachis hypogaea]5.3e-1080Show/hide
Query:  LLLCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        ++L D  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  LLLCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

TrEMBL top hitse value%identityAlignment
A0A078G4S8 40S ribosomal protein S272.6e-1081.25Show/hide
Query:  LCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        +C   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  LCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

A0A2K3KMY0 40S ribosomal protein s27-2-like (Fragment)1.5e-1090.7Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMV-FFCFCFN
        VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMV F CF  N
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMV-FFCFCFN

A0A3P6E670 40S ribosomal protein S272.6e-1081.25Show/hide
Query:  LCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        +C   VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  LCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

A0A498ID30 Uncharacterized protein8.0e-1242.66Show/hide
Query:  LLCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDAST
        + C   VLQNDIDLL+PPAELEKRKHKLKRLVQ+PNSFFM   C  CF                 S   +C+                            
Subjt:  LLCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDAST

Query:  LPLSSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVID
         P  S T K LW AVTARR  AS  EDV  SP+   S ER  D
Subjt:  LPLSSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVID

M0RHJ7 Uncharacterized protein2.1e-1241.22Show/hide
Query:  DLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDASTLPL
        D  VL NDIDLLNPPAELEKR+HKLKRLVQSPNSFFM   C  CF           N++TV S S                                   
Subjt:  DLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYIIFRVSDKTSNARDASTLPL

Query:  SSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVIDDAVRCFFL
             +LLW+A TAR   AS+   V+ SPR  LS E+ I+     FFL
Subjt:  SSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVIDDAVRCFFL

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-15.9e-1288.37Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

P47903 40S ribosomal protein S274.7e-0957.58Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCS
        VL +DIDLLNPPAELEK KHK KRLVQSPNSFFM   C  CFN   +   +   +     SS LC+
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFNFVMMVLSNLANLSTVLSSSFLCS

Q8L953 40S ribosomal protein S27-38.5e-1183.72Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

Q96564 40S ribosomal protein S271.9e-1083.72Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        VLQNDIDLLNPPAELEK KHK KRLVQSPNSFFM   C  CFN
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

Q9M2F1 40S ribosomal protein S27-25.9e-1288.37Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein4.2e-1388.37Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

AT3G61110.1 ribosomal protein S274.2e-1388.37Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN

AT3G61111.1 Zinc-binding ribosomal protein family protein1.6e-1262.3Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFCFNFVMMVLSNLANLSTVLSSS
        VLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM+  C          S+  N++T+ S S
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFCFNFVMMVLSNLANLSTVLSSS

AT5G47930.1 Zinc-binding ribosomal protein family protein6.1e-1283.72Show/hide
Query:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN
        VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFM   C  CFN
Subjt:  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFC-FCFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTGAGACCAATTGAGTGGAACCATGCACAGAACTTTGCCCCGGAGTACGTTCCACATGTGTACTTAACACCACTACTCCTATGTGACTTGAACGTTCTACAAAA
CGATATTGATTTGCTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGTATTCTTTTGCTTCTGTT
TCAATTTTGTTATGATGGTCTTGTCAAATTTAGCAAATCTCTCTACTGTCCTATCATCAAGTTTTCTTTGCTCAGTAGTTAATGTTTCTGCTTTTGTCTTGATTTATATA
ATATTCCGAGTCTCTGACAAGACGTCAAATGCCAGGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTA
TGCCAGCCAACAGGAGGACGTGCGAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGATGATGCGGTTCGATGTTTCTTTTTGCTGGGAAGAAATTGCAGTC
TCTGTTTTGATCATGGGTATATTTATTTTTCTTGTATGGTATCAGACTTGATTATGCTGTCTCTCCAAAATAGATTATATTTGGCTTTAGAGTTTATCTGGTTTTGTTTA
AAAGATGAATTTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTGAGACCAATTGAGTGGAACCATGCACAGAACTTTGCCCCGGAGTACGTTCCACATGTGTACTTAACACCACTACTCCTATGTGACTTGAACGTTCTACAAAA
CGATATTGATTTGCTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGTATTCTTTTGCTTCTGTT
TCAATTTTGTTATGATGGTCTTGTCAAATTTAGCAAATCTCTCTACTGTCCTATCATCAAGTTTTCTTTGCTCAGTAGTTAATGTTTCTGCTTTTGTCTTGATTTATATA
ATATTCCGAGTCTCTGACAAGACGTCAAATGCCAGGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACGGTCTTA
TGCCAGCCAACAGGAGGACGTGCGAGACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGATGATGCGGTTCGATGTTTCTTTTTGCTGGGAAGAAATTGCAGTC
TCTGTTTTGATCATGGGTATATTTATTTTTCTTGTATGGTATCAGACTTGATTATGCTGTCTCTCCAAAATAGATTATATTTGGCTTTAGAGTTTATCTGGTTTTGTTTA
AAAGATGAATTTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAGCTTAACTTTCTTTGATCGACTCTTTATTTTGTTTTGGGGTTGAATGGCTGCTATTTTAGGTGTA
ATTTGCATTAGAATCCTTCACTACCTTTACACGATCAAAGGTTTTAATGTTTTTTTTTACTAGAATTATTTGAACTACGGATATTGAAGAGAATGCCGTTAAAATAAACT
TTGAATTGATAAGCTTGTAACTTGTAGATTAA
Protein sequenceShow/hide protein sequence
MGLRPIEWNHAQNFAPEYVPHVYLTPLLLCDLNVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMVFFCFCFNFVMMVLSNLANLSTVLSSSFLCSVVNVSAFVLIYI
IFRVSDKTSNARDASTLPLSSATLKLLWYAVTARRSYASQQEDVRDSPRGVLSGERVIDDAVRCFFLLGRNCSLCFDHGYIYFSCMVSDLIMLSLQNRLYLALEFIWFCL
KDEFSCTELLAAFSKA