; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G008510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G008510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription initiation factor TFIID subunit 11 isoform X3
Genome locationchr09:9811306..9819493
RNA-Seq ExpressionLsi09G008510
SyntenyLsi09G008510
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579085.1 hypothetical protein SDJN03_23533, partial [Cucurbita argyrosperma subsp. sororia]2.2e-7885.71Show/hide
Query:  RIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSRPPPIENLVV
        R  RRKMD R KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS   A  RNPR SQPH QSDSSSRPPPIENLVV
Subjt:  RIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSRPPPIENLVV

Query:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---------EDDDEEEFTSSDEDVDDRRKECRK
        DGESQSILGDDLAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDAARLDPSPPSE         EDDD+EEF SSDED+DDR+KE RK
Subjt:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---------EDDDEEEFTSSDEDVDDRRKECRK

Query:  KKA
        KKA
Subjt:  KKA
KAG7016610.1 hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-7987Show/hide
Query:  RIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSRPPPIENLVV
        R  RRKMD R KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS   A  RNPR SQPH QSDSSSRPPPIENLVV
Subjt:  RIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSRPPPIENLVV

Query:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
        DGESQSILGDDLAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDAARLDPSPPSE      EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
TYK15177.1 transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa]4.9e-7889.06Show/hide
Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
XP_022939254.1 nucleolin [Cucurbita moschata]2.2e-7887.82Show/hide
Query:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS--AVPRNPRLSQPHIQSDSSSRPPPIENLVV
        R+  RRKMD R KM  GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS  A  RNPR SQPH QSDSSSRPPPIENLVV
Subjt:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS--AVPRNPRLSQPHIQSDSSSRPPPIENLVV

Query:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKECRKKKA
        DGESQSILGDDLAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKECRKKKA
XP_022993807.1 glucosidase 2 subunit beta [Cucurbita maxima]7.6e-7986.93Show/hide
Query:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVD
        R+  RRKMD R KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA   RNPR SQPH QSDSSSRPPPIENLVVD
Subjt:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVD

Query:  GESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
        GESQSILGDDLAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDA RLDPSPPSE      EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  GESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
TrEMBL top hitse value%identityAlignment
A0A1S4E6L5 uncharacterized protein LOC1035028664.0e-7888.54Show/hide
Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDL+LKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
A0A5A7VFP6 Transcription initiation factor TFIID subunit 11 isoform X31.5e-7788.54Show/hide
Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSIL DDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
A0A5D3CTC3 Transcription initiation factor TFIID subunit 11 isoform X32.4e-7889.06Show/hide
Query:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE
        MDSRKK GRGNDD  EQ+EQLLQAAQDDLMLKL++DSHMSRVSPNYL SDLDRRFQALRSRPSS   AVPRNPR S PHIQSDSSSR PPPIENLVVDGE
Subjt:  MDSRKKMGRGNDD--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS---AVPRNPRLSQPHIQSDSSSR-PPPIENLVVDGE

Query:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
        SQSILGDDLAARFAALKASLPSSTTPP SSIPND+DS DEEDEVEKLIQWAKDAARLDPSPPSEEDD+EEEF SSDEDV+DR KE RKKKAG
Subjt:  SQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG
A0A6J1FGM0 nucleolin1.1e-7887.82Show/hide
Query:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS--AVPRNPRLSQPHIQSDSSSRPPPIENLVV
        R+  RRKMD R KM  GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS  A  RNPR SQPH QSDSSSRPPPIENLVV
Subjt:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS--AVPRNPRLSQPHIQSDSSSRPPPIENLVV

Query:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKECRKKKA
        DGESQSILGDDLAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDAARLDPSPPSE   EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  DGESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE---EDDDEEEFTSSDEDVDDRRKECRKKKA
A0A6J1JTW4 glucosidase 2 subunit beta3.7e-7986.93Show/hide
Query:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVD
        R+  RRKMD R KMG GN+DEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSA   RNPR SQPH QSDSSSRPPPIENLVVD
Subjt:  RRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAVP-RNPRLSQPHIQSDSSSRPPPIENLVVD

Query:  GESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
        GESQSILGDDLAARFAALKASLPSS TPPPSSIPND+DSDDEEDEVEKLIQWAKDA RLDPSPPSE      EDDD+EEF SSDED+DDR+KE RKKKA
Subjt:  GESQSILGDDLAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSE------EDDDEEEFTSSDEDVDDRRKECRKKKA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24370.1 unknown protein1.4e-2244.19Show/hide
Query:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDLAARFAA
        G ++++VEQLLQAAQD+++LKLSVDSH SR S +YLD DL  RF AL+S+         +  Q   Q       P  +++V +        +DL  RFAA
Subjt:  GNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDDLAARFAA

Query:  LKASLPSSTTPP----PSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR
        LK SLPS+++         I  D D   E+ EV+KLIQWA DAARLDPSP S  DD++ +   SD++ D  R
Subjt:  LKASLPSSTTPP----PSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGGATTGGAAGGAGAAAAATGGATTCGAGAAAGAAGATGGGAAGAGGCAACGACGACGAACAAGTCGAGCAATTGCTACAAGCAGCTCAAGACGATCTCATGCT
GAAATTGAGCGTCGATTCACATATGTCGCGTGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCGCGACCTTCCTCCGCCGTTCCCC
GCAATCCTCGCCTTTCTCAGCCGCATATTCAATCCGATTCCTCCTCCCGACCGCCGCCGATTGAAAATCTTGTCGTCGATGGCGAATCTCAGTCGATTCTCGGTGACGAT
CTCGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACCACGCCGCCTCCGTCGTCGATACCTAACGATCTGGATAGCGACGACGAAGAGGATGAGGTTGA
GAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGACGATGACGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATA
GGAGAAAAGAGTGTCGGAAAAAGAAGGCCGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGGATTGGAAGGAGAAAAATGGATTCGAGAAAGAAGATGGGAAGAGGCAACGACGACGAACAAGTCGAGCAATTGCTACAAGCAGCTCAAGACGATCTCATGCT
GAAATTGAGCGTCGATTCACATATGTCGCGTGTATCCCCAAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCGCGACCTTCCTCCGCCGTTCCCC
GCAATCCTCGCCTTTCTCAGCCGCATATTCAATCCGATTCCTCCTCCCGACCGCCGCCGATTGAAAATCTTGTCGTCGATGGCGAATCTCAGTCGATTCTCGGTGACGAT
CTCGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGACCACGCCGCCTCCGTCGTCGATACCTAACGATCTGGATAGCGACGACGAAGAGGATGAGGTTGA
GAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGACGATGACGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATA
GGAGAAAAGAGTGTCGGAAAAAGAAGGCCGGATGA
Protein sequenceShow/hide protein sequence
MRRIGRRKMDSRKKMGRGNDDEQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSSAVPRNPRLSQPHIQSDSSSRPPPIENLVVDGESQSILGDD
LAARFAALKASLPSSTTPPPSSIPNDLDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDDEEEFTSSDEDVDDRRKECRKKKAG