CuGenDBv2

Gene ID	Lsi09G008710
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription initiation factor TFIID subunit 11-like
Genome location	chr09:10137559..10138155
RNA-Seq Expression	Lsi09G008710
Synteny	Lsi09G008710
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066209.1 acidic repeat-containing protein [Cucumis melo var. makuwa]

2.0e-74

85.5

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Query:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND
        MAE TNR EEVAFDAKRKPAD C + KEE  NKIQKLEVVEGEESCN VK N ENGDHK SDEQID +SS V+EGKD+DGV GA LDAGD+EE+ EDE+D
Subjt:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND

Query:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA
        SED EKSSGK A DRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGS+LDSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFATDL NDDDDSSDSDA
Subjt:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA

XP_004150738.1 nucleolin [Cucumis sativus]

3.4e-74

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Query:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND
        MAE TNR EEVAFDAKRKP D C + KEER NKIQKLEVVEGEESCN V  N ENGDHK SDEQ+D ISS V+EGK +DGV GA LDAGD+EE+ EDE+D
Subjt:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND

Query:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA
        SED EKSS K A+DRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGS+LDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA
Subjt:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA

XP_022939215.1 prostatic spermine-binding protein isoform X2 [Cucurbita moschata]

4.4e-74

84.16

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Query:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS
        MAET ++REE AFDAKRKPADPCCE KEER NKIQKLEVVEG E CNDVKKNG+NGDHK+ D+QID ISS  EGKD DGV+ AD+DAGD+ E+D+DE+D 
Subjt:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS

Query:  EDGEKSSGKAAK-DRKGKGIMKDDKGKGKLIEE--DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS
        E+GEKSSGKAAK DRKGKGIMKDDKGKGKLIEE  DDDDDEDSSDDGSE D+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGN+DDDSSDS
Subjt:  EDGEKSSGKAAK-DRKGKGIMKDDKGKGKLIEE--DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS

Query:  DA
        DA
Subjt:  DA

XP_023551083.1 nucleolin-like [Cucurbita pepo subsp. pepo]

7.5e-74

83.74

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Query:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS
        MAET ++REE AFD KRKPADPCCE KEER NKIQKLEVVEG E CNDVKKNG+NGDHK+ DEQID ISS  EGKD DGV+ AD+DAGD+ E+D+DE+D 
Subjt:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS

Query:  EDGEKSSGKAAK-DRKGKGIMKDDKGKGKLIEE---DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSD
        E+GEKSSGKAAK DRKGKGIMKDDKGKGKLIEE   DDDDDEDSSDDGSE D+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGN+DDDSSD
Subjt:  EDGEKSSGKAAK-DRKGKGIMKDDKGKGKLIEE---DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSD

Query:  SDA
        SDA
Subjt:  SDA

XP_038906649.1 pheromone-processing carboxypeptidase KEX1 [Benincasa hispida]

1.1e-82

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Query:  MAETTNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGD-HKESDEQIDKI-SSVVEGKDEDGVVGADLDAGDDEEEDEDEND
        MAETT  EEVAFDAKRKPADPCCE KEER NK+QKLEVVEGEESCNDVKKNGENGD HKE+DE ID + SSV EGKD+DGVVGADLDAGD+ E+DEDE+D
Subjt:  MAETTNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGD-HKESDEQIDKI-SSVVEGKDEDGVVGADLDAGDDEEEDEDEND

Query:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA
        SE+GEKSSGKAA+DRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFATDLGNDDDDSSDSDA
Subjt:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMR8 Uncharacterized protein

1.6e-74

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Query:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND
        MAE TNR EEVAFDAKRKP D C + KEER NKIQKLEVVEGEESCN V  N ENGDHK SDEQ+D ISS V+EGK +DGV GA LDAGD+EE+ EDE+D
Subjt:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND

Query:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA
        SED EKSS K A+DRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGS+LDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA
Subjt:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA

A0A1S3CIW7 acidic repeat-containing protein

3.1e-73

84.65

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Query:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND
        MAE TNR EEVAFDAKRKPAD C + KEE  NKIQKLEVVEGEESCN VK N ENGDHK SDEQID +SS V+EGKD+DGV GA LDAGD+EE+ EDE+D
Subjt:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND

Query:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEE--DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS
        SED EKSSGK A DRKGKGIMKDDKGKGKLIEE  DDDDDEDSSDDGS+LDSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFATDL NDDDDSSDS
Subjt:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEE--DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS

Query:  DA
        DA
Subjt:  DA

A0A5D3E1E7 Acidic repeat-containing protein

9.5e-75

85.5

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Query:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND
        MAE TNR EEVAFDAKRKPAD C + KEE  NKIQKLEVVEGEESCN VK N ENGDHK SDEQID +SS V+EGKD+DGV GA LDAGD+EE+ EDE+D
Subjt:  MAETTNR-EEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISS-VVEGKDEDGVVGADLDAGDDEEEDEDEND

Query:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA
        SED EKSSGK A DRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGS+LDSEESDLSDDPLAEVDLDNILPSRTRRR VHPGVYFATDL NDDDDSSDSDA
Subjt:  SEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA

A0A6J1FM23 prostatic spermine-binding protein isoform X2

2.1e-74

84.16

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Query:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS
        MAET ++REE AFDAKRKPADPCCE KEER NKIQKLEVVEG E CNDVKKNG+NGDHK+ D+QID ISS  EGKD DGV+ AD+DAGD+ E+D+DE+D 
Subjt:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS

Query:  EDGEKSSGKAAK-DRKGKGIMKDDKGKGKLIEE--DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS
        E+GEKSSGKAAK DRKGKGIMKDDKGKGKLIEE  DDDDDEDSSDDGSE D+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGN+DDDSSDS
Subjt:  EDGEKSSGKAAK-DRKGKGIMKDDKGKGKLIEE--DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS

Query:  DA
        DA
Subjt:  DA

A0A6J1K0H1 nucleolin-like

6.2e-74

83.66

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Query:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS
        MAET ++REE AFDAKRKPADPCCE KEER NKIQKLEVVEG E CNDVKKNG+NGDHK+ DEQID ISS  EGKD DGV  AD+DAG++ E+  DE+D 
Subjt:  MAET-TNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDS

Query:  EDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEE---DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS
        E+GEKSSGKAAKDRKGKGIMKDDKGKGKLIEE   DDDDDEDSSDDGSE D+EESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGN+DDDSSDS
Subjt:  EDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEE---DDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDS

Query:  DA
        DA
Subjt:  DA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12830.1 unknown protein

1.5e-24

44.04

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Query:  MAETTNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGE-NGD------HKESDEQIDKISSVVEGKD----EDGVVGADLDAGDD
        MA+  N+++ +F  KRK +D  C+ ++   NK QKL       S +   K+GE NG       +  ++E I   SSV+  K     E GV+G D+ A ++
Subjt:  MAETTNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGE-NGD------HKESDEQIDKISSVVEGKD----EDGVVGADLDAGDD

Query:  EEEDEDENDSEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSE----LDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATD
        E+EDE++ + +D E+   +   DRKGKGI ++DKGKGK+IE ++ DDED SDD  +     + +ESD SDDPLAEVDLDNILPSRTRRR+  PGV+   +
Subjt:  EEEDEDENDSEDGEKSSGKAAKDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSE----LDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATD

Query:  LGN-----DDDDSSDSDA
          N     +DD+SSDSDA
Subjt:  LGN-----DDDDSSDSDA

Sequences

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CDS sequence

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ATGGCGGAAACTACCAATAGAGAGGAGGTCGCATTTGATGCGAAGCGGAAACCTGCTGATCCTTGCTGCGAAACGAAAGAGGAGCGTTTGAACAAAATTCAGAAGCTCGA
AGTGGTTGAGGGTGAAGAATCCTGTAATGATGTGAAGAAGAATGGTGAGAATGGTGACCATAAGGAAAGTGATGAACAGATTGATAAAATTTCTTCAGTTGTGGAAGGGA
AAGATGAAGATGGAGTTGTTGGAGCTGATTTAGATGCGGGAGACGACGAGGAGGAGGATGAGGATGAAAACGACAGTGAGGATGGTGAAAAGTCGAGTGGAAAAGCGGCT
AAGGATCGAAAGGGGAAGGGTATTATGAAGGATGACAAAGGGAAAGGGAAATTGATAGAGGAAGACGATGACGACGATGAAGATTCCAGTGACGATGGAAGCGAATTGGA
TTCTGAAGAGAGCGATTTGTCGGATGATCCACTTGCGGAGGTCGATTTGGACAACATTCTTCCTTCAAGGACGCGGAGGCGAACGGTTCACCCTGGAGTTTATTTTGCTA
CGGATCTGGGGAACGACGACGATGATAGCAGTGATAGCGATGCTTGA

mRNA sequence

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Protein sequence

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MAETTNREEVAFDAKRKPADPCCETKEERLNKIQKLEVVEGEESCNDVKKNGENGDHKESDEQIDKISSVVEGKDEDGVVGADLDAGDDEEEDEDENDSEDGEKSSGKAA
KDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSELDSEESDLSDDPLAEVDLDNILPSRTRRRTVHPGVYFATDLGNDDDDSSDSDA

Lsi09G008710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome