; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G008750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G008750
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionpsbQ-like protein 3, chloroplastic
Genome locationchr09:10193457..10194328
RNA-Seq ExpressionLsi09G008750
SyntenyLsi09G008750
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0019898 - extrinsic component of membrane (cellular component)
GO:0005509 - calcium ion binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR008797 - Oxygen-evolving enhancer protein 3
IPR023222 - PsbQ-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148913.1 psbQ-like protein 3, chloroplastic [Cucumis sativus]2.2e-8088.59Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG
        MA+LIPIS+SNL NRIHFS S  T+SF SF TTPNCSNNA NISRRLGLGFIALMASSVTAIP EVANALDLKLIAPEQSLDEAE+GIR H EALLQVR 
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG

Query:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        LIESEAWKEAQKRLRS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDV  VWE Y K+EMAISDILSRI
Subjt:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

XP_008463126.1 PREDICTED: psbQ-like protein 3, chloroplastic [Cucumis melo]2.9e-8088.04Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG
        MA+LIPIS+SNL NRIHFSSS  T+SFQSF TTPNCS NA+NISRRLGLGFIALMASSVTAIP EVANAL+LKLIAPEQSLDEAE GIRGH EALLQVR 
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG

Query:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        L+ESEAWKEAQKRLRS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD   V ECY K+EMAISDILSRI
Subjt:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

XP_022991100.1 psbQ-like protein 3, chloroplastic isoform X1 [Cucurbita maxima]8.5e-7279.46Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVR
        MAEL PISVSNL NRIHFSSS P +SFQ F  T    +N R+ISRRLGLGF+ALMA SSV + PV++ NALDLKLIAPEQS +EAE+GIRGH EA+LQVR
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVR

Query:  GLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        GLIESE+WKEAQK+LRSSS LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD E VW+CY+ I MAISDILSRI
Subjt:  GLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

XP_023551782.1 psbQ-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo]6.7e-6977.37Show/hide
Query:  MAELIPISVSNLYNRIHFSSSL-PTVSFQSFKTT----PNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEA
        MAEL PISVSNL NRIHFSSS  P +S Q F  T     NC + +R+ISRRLGLG IALMA SSV + PV++ANALDLKLIAPEQS +EAE+GIRGH EA
Subjt:  MAELIPISVSNLYNRIHFSSSL-PTVSFQSFKTT----PNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEA

Query:  LLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        +LQVRGLIESE+WKEAQK+LRSSS LLKQDLYTIIEYKPPAERP LR+LYSLLFNNVTRMDYAARDKD E VW+CY+ I MAISDILSRI
Subjt:  LLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

XP_038877067.1 psbQ-like protein 3, chloroplastic [Benincasa hispida]1.0e-8088.04Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG
        MAEL+PISVSNL NRI FSS  PT+SFQSF TTPNCS NA NISRRLGLGFIALMASSVTA PVE+ANALDLKLIAPEQSLDEAE+GIR H EALLQVR 
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG

Query:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        LIESEAWKEAQKRLRSSS LLKQDLYTIIEYKPPAERPALRKLYS+LFNNVTRMDYAARDKDVE VW+CYN I +AISDILSRI
Subjt:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

TrEMBL top hitse value%identityAlignment
A0A0A0KT23 Uncharacterized protein1.1e-8088.59Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG
        MA+LIPIS+SNL NRIHFS S  T+SF SF TTPNCSNNA NISRRLGLGFIALMASSVTAIP EVANALDLKLIAPEQSLDEAE+GIR H EALLQVR 
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG

Query:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        LIESEAWKEAQKRLRS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDV  VWE Y K+EMAISDILSRI
Subjt:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

A0A1S3CIJ1 psbQ-like protein 3, chloroplastic1.4e-8088.04Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG
        MA+LIPIS+SNL NRIHFSSS  T+SFQSF TTPNCS NA+NISRRLGLGFIALMASSVTAIP EVANAL+LKLIAPEQSLDEAE GIRGH EALLQVR 
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG

Query:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        L+ESEAWKEAQKRLRS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD   V ECY K+EMAISDILSRI
Subjt:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

A0A5A7VLN5 PsbQ-like protein 31.4e-8088.04Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG
        MA+LIPIS+SNL NRIHFSSS  T+SFQSF TTPNCS NA+NISRRLGLGFIALMASSVTAIP EVANAL+LKLIAPEQSLDEAE GIRGH EALLQVR 
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRG

Query:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        L+ESEAWKEAQKRLRS+SALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKD   V ECY K+EMAISDILSRI
Subjt:  LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

A0A6J1HES6 psbQ-like protein 3, chloroplastic isoform X16.1e-6877.96Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTV-SFQSFKTTPNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQV
        MAEL PISVSNL NRIHFSSS P + S Q F  T    +N R+ISRRLGLG IALMA SSV + PV +ANALDLKLIAPEQS +EAE+GIRGH EA+LQV
Subjt:  MAELIPISVSNLYNRIHFSSSLPTV-SFQSFKTTPNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQV

Query:  RGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        RGLIESE+WKEAQK+LR+SS LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD E V +CY+ I MAISDILSRI
Subjt:  RGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

A0A6J1JRX6 psbQ-like protein 3, chloroplastic isoform X14.1e-7279.46Show/hide
Query:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVR
        MAEL PISVSNL NRIHFSSS P +SFQ F  T    +N R+ISRRLGLGF+ALMA SSV + PV++ NALDLKLIAPEQS +EAE+GIRGH EA+LQVR
Subjt:  MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMA-SSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVR

Query:  GLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        GLIESE+WKEAQK+LRSSS LLKQDLYTIIEYKPPAERP LRKLYSLLFNNVTRMDYAARDKD E VW+CY+ I MAISDILSRI
Subjt:  GLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

SwissProt top hitse value%identityAlignment
Q2V4B2 PsbQ-like protein 3, chloroplastic2.7e-2045.87Show/hide
Query:  PEQSLDEAETGIRGHVEALLQVRG-LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEM
        PE++++ A+ G+R + E + +++  +IE + WKE  K LR S++ +KQD Y II+ KPP +RP  R LYS LFN++T+MDYAARD D  +V E Y  I  
Subjt:  PEQSLDEAETGIRGHVEALLQVRG-LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEM

Query:  AISDILSRI
         + DI  RI
Subjt:  AISDILSRI

Q41048 Oxygen-evolving enhancer protein 3-1, chloroplastic1.8e-0828.43Show/hide
Query:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS
        EA   ++   + ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++L   LF+ +  +D+AA+ K   E  + +   + A+ D+L+
Subjt:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS

Query:  RI
        ++
Subjt:  RI

Q41806 Oxygen-evolving enhancer protein 3-2, chloroplastic2.4e-0828.43Show/hide
Query:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS
        EA   ++   + ++ ++ LI+ +AW   Q  LR  ++ L+ DL T+I  KP  E+ +L++L   LF+ +  +D+AA+ K   E  + +   + A+ D+L+
Subjt:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS

Query:  RI
        ++
Subjt:  RI

Q9XFT3 Oxygen-evolving enhancer protein 3-1, chloroplastic9.6e-1031.37Show/hide
Query:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS
        EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ L + LF+ +  +DYAA+ K   +  + Y +   A++++L+
Subjt:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS

Query:  RI
        ++
Subjt:  RI

Arabidopsis top hitse value%identityAlignment
AT2G01918.1 PsbQ-like 31.9e-2145.87Show/hide
Query:  PEQSLDEAETGIRGHVEALLQVRG-LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEM
        PE++++ A+ G+R + E + +++  +IE + WKE  K LR S++ +KQD Y II+ KPP +RP  R LYS LFN++T+MDYAARD D  +V E Y  I  
Subjt:  PEQSLDEAETGIRGHVEALLQVRG-LIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEM

Query:  AISDILSRI
         + DI  RI
Subjt:  AISDILSRI

AT3G01440.1 PsbQ-like 14.7e-0425.56Show/hide
Query:  LLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI
        LL +  LI  +     +K LR  S  L  D   +I      ++  L  L + LF+N  +++ AA+ K++ E   CY   +  + ++++R+
Subjt:  LLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI

AT4G21280.1 photosystem II subunit QA6.8e-1131.37Show/hide
Query:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS
        EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ L + LF+ +  +DYAA+ K   +  + Y +   A++++L+
Subjt:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS

Query:  RI
        ++
Subjt:  RI

AT4G21280.2 photosystem II subunit QA6.8e-1131.37Show/hide
Query:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS
        EA    +   + ++ V+ LI+ +AW   Q  LRS ++ L+ DL TII  KP  E+ +L+ L + LF+ +  +DYAA+ K   +  + Y +   A++++L+
Subjt:  EAETGIRGHVEALLQVRGLIESEAWKEAQKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILS

Query:  RI
        ++
Subjt:  RI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAATTAATCCCAATCTCAGTCTCAAACCTCTATAATCGCATTCATTTCTCTTCCTCTCTTCCCACAGTCTCCTTCCAATCATTCAAGACCACGCCAAATTGTTC
TAATAACGCGAGAAACATAAGCAGAAGACTAGGGCTTGGATTCATAGCTTTAATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGATCTGAAAT
TGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAAGGAAGCT
CAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATTCTCTTCT
CTTCAACAATGTTACGCGAATGGATTATGCAGCGAGAGATAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTGTCAAGAA
TTTAG
mRNA sequenceShow/hide mRNA sequence
CTTTATGTATTTTTTTCAAAAAAAATTCATCCATCCCTTGCTTACGTGGCAAATTCCTATCATCTCACATCCATACAAAGATACAGAGTTTGCACAAAAGCTTCACTCTG
TACTCCAATGGCGGAATTAATCCCAATCTCAGTCTCAAACCTCTATAATCGCATTCATTTCTCTTCCTCTCTTCCCACAGTCTCCTTCCAATCATTCAAGACCACGCCAA
ATTGTTCTAATAACGCGAGAAACATAAGCAGAAGACTAGGGCTTGGATTCATAGCTTTAATGGCGTCATCAGTAACAGCGATACCGGTGGAAGTAGCAAATGCTTTGGAT
CTGAAATTGATCGCGCCGGAGCAGAGCTTGGACGAGGCTGAGACCGGAATCAGAGGCCACGTGGAAGCGCTTTTGCAGGTGAGAGGCTTAATCGAATCGGAGGCTTGGAA
GGAAGCTCAGAAGCGGTTGAGAAGCAGTTCGGCGTTGCTGAAACAAGATCTGTACACTATAATTGAATACAAACCGCCTGCGGAGAGGCCTGCTCTCAGGAAACTCTATT
CTCTTCTCTTCAACAATGTTACGCGAATGGATTATGCAGCGAGAGATAAAGATGTAGAAGAAGTTTGGGAGTGCTACAATAAGATTGAGATGGCAATCTCTGATATTTTG
TCAAGAATTTAGAAAGATTAATGAAGATTTTTTATTCTCAACTCAAGCCAATGAAATCGCATATTCATTA
Protein sequenceShow/hide protein sequence
MAELIPISVSNLYNRIHFSSSLPTVSFQSFKTTPNCSNNARNISRRLGLGFIALMASSVTAIPVEVANALDLKLIAPEQSLDEAETGIRGHVEALLQVRGLIESEAWKEA
QKRLRSSSALLKQDLYTIIEYKPPAERPALRKLYSLLFNNVTRMDYAARDKDVEEVWECYNKIEMAISDILSRI