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Lsi09G008990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G008990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease H
Genome locationchr09:10737327..10739111
RNA-Seq ExpressionLsi09G008990
SyntenyLsi09G008990
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]2.2e-1138.52Show/hide
Query:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC
        N+ ++Q +    QG    ++VA +  PM +LF++LL + YIS+E+  L    + +D  LTC FH G KGH L++C+ F  K  EL++ K+LT    + S 
Subjt:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC

Query:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD
          +   +VE+    E ++ +LK K LTI YREKPD
Subjt:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]7.0e-0254.76Show/hide
Query:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR
        QQPY++ PQYSP +YP PYGY    VNN +  Y PY  Q  R
Subjt:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]3.5e-1740Show/hide
Query:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC
        N+ ++Q +    QG    ++V+ +  PM+ LF++L  + Y+S+EH    + CE++D  LTC +HAG +GH L++CS F EK  EL+++K+LT+TQ   S 
Subjt:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC

Query:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD
        Q++ I +VE  S+ E ++   K K LT+ YREKP+
Subjt:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]4.7e-1439.26Show/hide
Query:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC
        N+ ++Q +    QG    ++VA +  P ++LF++LL + Y+S+E+    L  +++D  LTC FHAG KGH L++C+ F  K  EL++ K+LT+   + S 
Subjt:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC

Query:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD
        Q + I +VE+ S  E ++  LK K LTI Y EKPD
Subjt:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.3e-1342.74Show/hide
Query:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSCQDREICIVEESSSKEDTN
        ++VA +  PM +LF++LL + Y+S+E+    L  + +D  LTC FHAG KGH L++C+ F  K  EL++ K+LT+   + S Q + I IVE+ S  E ++
Subjt:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSCQDREICIVEESSSKEDTN

Query:  VTLKRKSLTITYREKPD
          LK K LTI Y EKP+
Subjt:  VTLKRKSLTITYREKPD

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]2.7e-0152.38Show/hide
Query:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR
        QQPY + P+Y+P +YP PYGY    VNN +  YSPY  Q  R
Subjt:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.5e-1240.98Show/hide
Query:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFH--EKELIEMKVLTITQASRSCQDREICIVE-----ESSS
        ++VA +  PM++LF++LL + Y+S+E+    L  + +D  LTC FHAG KGH L++C+ F    +EL++ K+LT+   + S Q + I +VE     E S 
Subjt:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFH--EKELIEMKVLTITQASRSCQDREICIVE-----ESSS

Query:  KEDTNVTLKRKSLTITYREKPD
         E ++  LK K LTI Y EKPD
Subjt:  KEDTNVTLKRKSLTITYREKPD

TrEMBL top hitse value%identityAlignment
A0A6J1D099 Ribonuclease H1.1e-1138.52Show/hide
Query:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC
        N+ ++Q +    QG    ++VA +  PM +LF++LL + YIS+E+  L    + +D  LTC FH G KGH L++C+ F  K  EL++ K+LT    + S 
Subjt:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC

Query:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD
          +   +VE+    E ++ +LK K LTI YREKPD
Subjt:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD

A0A6J1D099 Ribonuclease H3.4e-0254.76Show/hide
Query:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR
        QQPY++ PQYSP +YP PYGY    VNN +  Y PY  Q  R
Subjt:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.7e-1740Show/hide
Query:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC
        N+ ++Q +    QG    ++V+ +  PM+ LF++L  + Y+S+EH    + CE++D  LTC +HAG +GH L++CS F EK  EL+++K+LT+TQ   S 
Subjt:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC

Query:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD
        Q++ I +VE  S+ E ++   K K LT+ YREKP+
Subjt:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD

A0A6J1DZ90 Ribonuclease H2.3e-1439.26Show/hide
Query:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC
        N+ ++Q +    QG    ++VA +  P ++LF++LL + Y+S+E+    L  +++D  LTC FHAG KGH L++C+ F  K  EL++ K+LT+   + S 
Subjt:  NNTSMQYSPYVGQG----TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSC

Query:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD
        Q + I +VE+ S  E ++  LK K LTI Y EKPD
Subjt:  QDREICIVEESSSKEDTNVTLKRKSLTITYREKPD

A0A6J1E2J7 Ribonuclease H1.1e-1342.74Show/hide
Query:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSCQDREICIVEESSSKEDTN
        ++VA +  PM +LF++LL + Y+S+E+    L  + +D  LTC FHAG KGH L++C+ F  K  EL++ K+LT+   + S Q + I IVE+ S  E ++
Subjt:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFHEK--ELIEMKVLTITQASRSCQDREICIVEESSSKEDTN

Query:  VTLKRKSLTITYREKPD
          LK K LTI Y EKP+
Subjt:  VTLKRKSLTITYREKPD

A0A6J1E2J7 Ribonuclease H1.3e-0152.38Show/hide
Query:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR
        QQPY + P+Y+P +YP PYGY    VNN +  YSPY  Q  R
Subjt:  QQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTR

A0A6J1E2J7 Ribonuclease H7.3e-1340.98Show/hide
Query:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFH--EKELIEMKVLTITQASRSCQDREICIVE-----ESSS
        ++VA +  PM++LF++LL + Y+S+E+    L  + +D  LTC FHAG KGH L++C+ F    +EL++ K+LT+   + S Q + I +VE     E S 
Subjt:  TRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCLFHAGVKGHLLDECSRFH--EKELIEMKVLTITQASRSCQDREICIVE-----ESSS

Query:  KEDTNVTLKRKSLTITYREKPD
         E ++  LK K LTI Y EKPD
Subjt:  KEDTNVTLKRKSLTITYREKPD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAGTTACCAATGGGACGTTTCACTCATCCTAATGTGAAAACCTCGAGAACGAGGAAGATTGAAAATTCCATACAACAACCTTATCAGCAAATGCCGCAATACTC
TCCAAGTTTTTATCCACCCCCATATGGATATTATCCATATCAGGTGAATAATACATCTATGCAATATTCTCCTTATGTTGGTCAAGGAACCAGGGTTGCATATATGAACA
TTCCTATGAAACAACTTTTTGATGTTCTCTTGGAAAACAAATATATTTCTATTGAACATTCGAGCTTAGTCCTTGATTGTGAGAAGCATGACAATAAGTTGACTTGCCTT
TTCCATGCTGGGGTAAAAGGTCATTTGCTAGATGAATGTTCTCGTTTTCATGAAAAAGAGTTGATTGAAATGAAAGTTCTTACTATCACACAAGCTAGTCGCTCTTGTCA
AGATCGTGAAATATGTATAGTGGAAGAGTCATCTTCCAAAGAAGATACTAATGTGACACTCAAACGAAAGTCTTTGACAATAACTTATCGAGAAAAACCTGATCCA
mRNA sequenceShow/hide mRNA sequence
TACCACATTACACGTCATACAATCCTATGTATGAGTTACCAATGGGACGTTTCACTCATCCTAATGTGAAAACCTCGAGAACGAGGAAGATTGAAAATTCCATACAACAA
CCTTATCAGCAAATGCCGCAATACTCTCCAAGTTTTTATCCACCCCCATATGGATATTATCCATATCAGGTGAATAATACATCTATGCAATATTCTCCTTATGTTGGTCA
AGGAACCAGGGTTGCATATATGAACATTCCTATGAAACAACTTTTTGATGTTCTCTTGGAAAACAAATATATTTCTATTGAACATTCGAGCTTAGTCCTTGATTGTGAGA
AGCATGACAATAAGTTGACTTGCCTTTTCCATGCTGGGGTAAAAGGTCATTTGCTAGATGAATGTTCTCGTTTTCATGAAAAAGAGTTGATTGAAATGAAAGTTCTTACT
ATCACACAAGCTAGTCGCTCTTGTCAAGATCGTGAAATATGTATAGTGGAAGAGTCATCTTCCAAAGAAGATACTAATGTGACACTCAAACGAAAGTCTTTGACAATAAC
TTATCGAGAAAAACCTGATCCA
Protein sequenceShow/hide protein sequence
MYELPMGRFTHPNVKTSRTRKIENSIQQPYQQMPQYSPSFYPPPYGYYPYQVNNTSMQYSPYVGQGTRVAYMNIPMKQLFDVLLENKYISIEHSSLVLDCEKHDNKLTCL
FHAGVKGHLLDECSRFHEKELIEMKVLTITQASRSCQDREICIVEESSSKEDTNVTLKRKSLTITYREKPDP