CuGenDBv2

Gene ID	Lsi09G009650
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 3-like
Genome location	chr09:12679269..12703801
RNA-Seq Expression	Lsi09G009650
Synteny	Lsi09G009650
Gene Ontology terms	GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008906 - HAT, C-terminal dimerisation domain IPR012337 - Ribonuclease H-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040447.1 transposase [Cucumis melo var. makuwa]

6.9e-25

61.76

Show/hide

Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT
        A V+ +  FDIL WWK N  RFE L  +++DILAIPVSTVASESAFST  R+ DSSR SLAP+TVE LICTQNWLNS PI + F  + E+ S  EE  R 
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT

Query:  IM
        +M
Subjt:  IM

KAA0048472.1 transposase [Cucumis melo var. makuwa]

5.3e-25

61.76

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Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT
        A V+ +  FDIL WWK N  RFE L  +++DILAIPVSTVASESAFST  R+ DSSR SLAP+TVE LICTQNWLNS PI + F  + E+ S  EE  R 
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT

Query:  IM
        +M
Subjt:  IM

XP_038893896.1 uncharacterized protein LOC120082692 isoform X1 [Benincasa hispida]

1.4e-25

64.29

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Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEK
        A VKN+  FDIL WWK N HRFE LS +++DIL IPVSTVASESAFS + R  DSSR SLAP+TVE LICT+NWLNS PID++     E+ S  EEE+
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEK

XP_038893897.1 uncharacterized protein LOC120082692 isoform X2 [Benincasa hispida]

1.4e-25

64.29

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Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEK
        A VKN+  FDIL WWK N HRFE LS +++DIL IPVSTVASESAFS + R  DSSR SLAP+TVE LICT+NWLNS PID++     E+ S  EEE+
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEK

XP_038893898.1 uncharacterized protein LOC120082692 isoform X3 [Benincasa hispida]

1.4e-25

64.29

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Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEK
        A VKN+  FDIL WWK N HRFE LS +++DIL IPVSTVASESAFS + R  DSSR SLAP+TVE LICT+NWLNS PID++     E+ S  EEE+
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEK

TrEMBL top hits

e value

%identity

Alignment

A0A5D3CXI1 Zinc finger BED domain-containing protein RICESLEEPER 3-like

3.4e-25

61.76

Show/hide

Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT
        A V+ +  FDIL WWK N  RFE L  +++DILAIPVSTVASESAFST  R+ DSSR SLAP+TVE LICTQNWLNS PI + F  + E+ S  EE  R 
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT

Query:  IM
        +M
Subjt:  IM

A0A5D3DAN8 Zinc finger BED domain-containing protein RICESLEEPER 3-like

3.4e-25

61.76

Show/hide

Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT
        A V+ +  FDIL WWK N  RFE L  +++DILAIPVSTVASESAFST  R+ DSSR SLAP+TVE LICTQNWLNS PI + F  + E+ S  EE  R 
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT

Query:  IM
        +M
Subjt:  IM

A0A5D3DIL8 Putative transposase

3.4e-25

61.76

Show/hide

Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT
        A V+ +  FDIL WWK N  RFE L  +++DILAIPVSTVASESAFST  R+ DSSR SLAP+TVE LICTQNWLNS PI + F  + E+ S  EE  R 
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT

Query:  IM
        +M
Subjt:  IM

A0A5D3DXX1 Transposase

2.6e-25

61.76

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Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT
        A V+ +  FDIL WWK N  RFE L  +++DILAIPVSTVASESAFST  R+ DSSR SLAP+TVE LICTQNWLNS PI + F  + E+ S  EE  R 
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT

Query:  IM
        +M
Subjt:  IM

A0A5D3DZY7 Putative transposase

3.4e-25

61.76

Show/hide

Query:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT
        A V+ +  FDIL WWK N  RFE L  +++DILAIPVSTVASESAFST  R+ DSSR SLAP+TVE LICTQNWLNS PI + F  + E+ S  EE  R 
Subjt:  ALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRT

Query:  IM
        +M
Subjt:  IM

SwissProt top hits

e value

%identity

Alignment

P03010 Putative AC9 transposase

1.1e-12

Show/hide

Query:  LVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWL
        L+K+   FDILSWW+     +  L+ I++D+LAI VSTVASESAFS   R+ D  R+ L    VE LICT++W+
Subjt:  LVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWL

P08770 Putative AC transposase

1.1e-12

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Query:  LVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWL
        L+K+   FDILSWW+     +  L+ I++D+LAI VSTVASESAFS   R+ D  R+ L    VE LICT++W+
Subjt:  LVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWL

Arabidopsis top hits

e value

%identity

Alignment

AT3G42170.1 BED zinc finger ;hAT family dimerisation domain

1.9e-12

47.76

Show/hide

Query:  FDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWL
        FD+L WWK N  ++ TLS +++DIL+IPVS  A +  F  + R  D  ++SL P TVE LIC + WL
Subjt:  FDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWL

Sequences

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CDS sequence

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ATGGCTCTTGTTAAGAATGATCCAACCTTTGACATACTTAGTTGGTGGAAACATAATGGTCATCGGTTTGAGACTCTTAGTGCAATAAGTAAAGATATTTTAGCAATCCC
AGTATCGACAGTAGCATCTGAGTCCGCTTTTAGTACTAAAAGACGTATAGATGACTCATCACGTTCTTCATTGGCTCCTAGAACGGTCGAGACTCTTATATGTACTCAAA
ATTGGCTCAATTCTAAACCAATAGATATTGATTTTTACAAACAATTCGAGAAAGACTCAACAATTGAAGAAGAGAAGAGAACCATAATGCGAGTGGACGGAGCTAACGCC
AGACACACGACGAACGAGGTTGCCGATAGAGAATGCCAATGGCGACGACGCACGAACAGCCGACTGCACACAAACGACAATGCACGAATGATCGGGTGTCGAAGAATGAG
CTTACGACGAATAACGGAGATGGCTTCTAAAAAAGAGCATTACAAAGCTCAGAATGAAGCGAGAAGGGTGAGAAGGGTGAGAAGTAGCACAACTAGGTTACTGGAAGTGG
TGAAAGATGGGGCAGCCGACGGCGACGGTGCCGGCGAGTCCTCACCGGACGGTCCCATGTTGTCGTGTGACGGTGTTGGAGCTGCCGTCGGGCCACTGCTGGGCGGCATT
TCTGGTGCTGGTGGTGCTGCTATTGGAGGGTTAACTGCAACAAAATACGGTGTACCTGGAGCCGGAGTTGGGGCCTTTGTAGTTGGAGCCGGCGTTGGCGCCTGTGTACT
TGGAGACGGTGTAGGGGCCTGTGTACTTGGAGCCGGCGTTGGCGCCTTTGTAGTTGGAGCCGGCGTTGGCGCCTTTGTAGTTGGAGCCGGCGTTGGCGCCTTTGTAGTTG
GAGCCGGCGTTGGCGCTTTAGTTCTTGGAGCCGGCGTTGGCGCCTTTGTAGTTGGAGCCGGCGTTGGCGCCTTTGTAGTTGGAGCCGGCGTTGGCGCTTTAGTTCTTGGA
GCCGGCGTTGGCGGTTTAGTACTTGGAAGTGGCGTTGGCGGTTTAGTAGTTGGAACTGCAGCAGGGGCCATACCTGGGGGAAGAGGAACTGCGAAGAAGAAAGAAAGCTG
A

mRNA sequence

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Protein sequence

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MALVKNDPTFDILSWWKHNGHRFETLSAISKDILAIPVSTVASESAFSTKRRIDDSSRSSLAPRTVETLICTQNWLNSKPIDIDFYKQFEKDSTIEEEKRTIMRVDGANA
RHTTNEVADRECQWRRRTNSRLHTNDNARMIGCRRMSLRRITEMASKKEHYKAQNEARRVRRVRSSTTRLLEVVKDGAADGDGAGESSPDGPMLSCDGVGAAVGPLLGGI
SGAGGAAIGGLTATKYGVPGAGVGAFVVGAGVGACVLGDGVGACVLGAGVGAFVVGAGVGAFVVGAGVGAFVVGAGVGALVLGAGVGAFVVGAGVGAFVVGAGVGALVLG
AGVGGLVLGSGVGGLVVGTAAGAIPGGRGTAKKKES

Lsi09G009650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome