CuGenDBv2

Gene ID	Lsi09G009700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	cap-specific mRNA (Nucleoside-2'-O-)-methyltransferase 1
Genome location	chr09:12902171..12902848
RNA-Seq Expression	Lsi09G009700
Synteny	Lsi09G009700
Gene Ontology terms	GO:0006470 - protein dephosphorylation (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0004722 - protein serine/threonine phosphatase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008460478.1 PREDICTED: uncharacterized protein LOC103499279 [Cucumis melo]

2.3e-103

87.56

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGD+YNRFNPQNV HKH+FLPMLCSKPAIKDGRPPRCDRDR +S S DPLSPRIGCMGQVKRNNRVAGLPISHRILITTKN V  +KNGNNPNVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPSTT T T +TRST   A SISTAGVNGCGSRRR APNS ITGKKSVSENGNCG  NV+DLDPPLPVVRRVQKAGEE GETENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVL+SL+IQQTHLPKHRLQITTV
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

XP_011655205.1 uncharacterized protein LOC105435499 [Cucumis sativus]

2.5e-102

87.11

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGD+Y+RFNPQ V HKH+FLPMLCSKPAIKDGRPPRCDRDR +S S DPLSPRIGCMGQVKRNNRVAGLPISHRILITTKN VL NKNGNNPNVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPST  T   +TRST   A SISTAGVNGCGSRRR APNS ITGKKSVSENGNCGS NV+DLDPPLPVVRRVQKAGEER ETENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVLQ+L+IQQTHLPKHRLQITTV
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

XP_022939156.1 uncharacterized protein LOC111445151 [Cucurbita moschata]

9.0e-100

86.22

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGDRYNRFNPQ  R K+MFLPMLCSKPAIKDGRPPRCD  R+ESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILI+TKN VL+NKNG+N NVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPSTTGT+   TRST  AAASISTAGVN CGSRRR A N+AI+GKK VSENGNC  F+VVDLDPPLPV+RRVQKAGEERGE ENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVLQSLQIQQTHLPKHRLQIT+V
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

XP_022993111.1 uncharacterized protein LOC111489229 [Cucurbita maxima]

2.1e-101

87.56

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGDRYNRFNPQN R K+MFLPMLCSKPAIKDGRPPRCD  R+ESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILI+TKN VL++KNG+N NVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPSTTGT+   TRS A AAASISTAGVN CGSRRRAA N+AI+GKK VSENGNC SF+VVDLDPPLPVVRRVQKAGEERGE ENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVLQSLQIQQTHLPKHRLQIT+V
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

XP_038875349.1 uncharacterized protein LOC120067829 [Benincasa hispida]

8.4e-114

93.81

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGD+YNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKN VLN+KNGNNPNVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAA-AASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRR
        KFFS+KNLLASPS+T T TGTTRSTAAA AASIS+ GVNGCGSRRRAAPNSAI GKKSVSENGNCGSFN+VDLDPPLPVVRRVQKAGEERGE +NLWKRR
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAA-AASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRR

Query:  SGGIVLQSLQIQQTHLPKHRLQITTV
        SGGIVLQSLQIQQTHLPKHRLQITTV
Subjt:  SGGIVLQSLQIQQTHLPKHRLQITTV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KN75 Uncharacterized protein

1.2e-102

87.11

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGD+Y+RFNPQ V HKH+FLPMLCSKPAIKDGRPPRCDRDR +S S DPLSPRIGCMGQVKRNNRVAGLPISHRILITTKN VL NKNGNNPNVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPST  T   +TRST   A SISTAGVNGCGSRRR APNS ITGKKSVSENGNCGS NV+DLDPPLPVVRRVQKAGEER ETENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVLQ+L+IQQTHLPKHRLQITTV
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

A0A1S3CD13 uncharacterized protein LOC103499279

1.1e-103

87.56

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGD+YNRFNPQNV HKH+FLPMLCSKPAIKDGRPPRCDRDR +S S DPLSPRIGCMGQVKRNNRVAGLPISHRILITTKN V  +KNGNNPNVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPSTT T T +TRST   A SISTAGVNGCGSRRR APNS ITGKKSVSENGNCG  NV+DLDPPLPVVRRVQKAGEE GETENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVL+SL+IQQTHLPKHRLQITTV
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

A0A6J1CKJ1 uncharacterized protein LOC111011846

2.4e-98

82.22

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGDRYNRFNP+N+R K +FLPMLCSKPAIKDGR P+CDRDRSESFSGDPLSPRIGC+GQVKRNNRVAGLPISHRILITTKN VLNN+ GNN NVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLLASPS       + RS A  AAS+STA  NGCGSRRRAAPN AI+GKK VS NGNC SF+VVDLDPPLPVVRRVQKAGEERGET NLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
         G VLQSLQIQ  H+PKHRLQITT+
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

A0A6J1FF48 uncharacterized protein LOC111445151

4.4e-100

86.22

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGDRYNRFNPQ  R K+MFLPMLCSKPAIKDGRPPRCD  R+ESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILI+TKN VL+NKNG+N NVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPSTTGT+   TRST  AAASISTAGVN CGSRRR A N+AI+GKK VSENGNC  F+VVDLDPPLPV+RRVQKAGEERGE ENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVLQSLQIQQTHLPKHRLQIT+V
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

A0A6J1JVE8 uncharacterized protein LOC111489229

1.0e-101

87.56

Show/hide

Query:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK
        MGDRYNRFNPQN R K+MFLPMLCSKPAIKDGRPPRCD  R+ESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILI+TKN VL++KNG+N NVGYFKLK
Subjt:  MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLK

Query:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS
        KFFSSKNLL SPSTTGT+   TRS A AAASISTAGVN CGSRRRAA N+AI+GKK VSENGNC SF+VVDLDPPLPVVRRVQKAGEERGE ENLWKRRS
Subjt:  KFFSSKNLLASPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRS

Query:  GGIVLQSLQIQQTHLPKHRLQITTV
        GGIVLQSLQIQQTHLPKHRLQIT+V
Subjt:  GGIVLQSLQIQQTHLPKHRLQITTV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G36940.1 unknown protein

1.2e-25

37.5

Show/hide

Query:  FLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLKKFFSSKNL-LASPSTTGT
        FLPMLCS+P+IK+   P            DPLSP+I C+GQVKR+N++ G P +     +   V  +          YFKLK+ FS KNL  ++P+TT T
Subjt:  FLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLKKFFSSKNL-LASPSTTGT

Query:  ATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRSGGIVLQSLQIQQTHLPK
         T                      SR R         +K    N      +V +LDPPLPVV++    G      ENLWKRRSGG  L+SLQIQ   +  
Subjt:  ATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRSGGIVLQSLQIQQTHLPK

Query:  HRLQITTV
        H+L++TTV
Subjt:  HRLQITTV

AT1G36940.2 unknown protein

1.6e-25

37.02

Show/hide

Query:  FLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLKKFFSSKNL-LASPSTTGT
        FLPMLCS+P+IK+   P            DPLSP+I C+GQVKR+N++ G P +     +   V  +          YFKLK+ FS KNL  ++P+TT T
Subjt:  FLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLKKFFSSKNL-LASPSTTGT

Query:  ATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRSGGIVLQSLQIQQTHLPK
         T                      SR R         +K    N      +V +LDPPLPVV++    G      ENLWKRRSGG  L+SLQIQ   +  
Subjt:  ATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRSGGIVLQSLQIQQTHLPK

Query:  HRLQITTV
        H+L++TT+
Subjt:  HRLQITTV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGGACAGATACAATCGCTTCAACCCACAAAACGTTCGCCACAAACACATGTTCTTACCGATGCTCTGTTCTAAGCCGGCGATTAAAGACGGCCGGCCACCGAGATG
CGATCGGGACCGTTCCGAGTCCTTTTCCGGTGACCCTTTATCGCCGAGAATCGGATGTATGGGTCAAGTTAAACGGAATAACAGAGTTGCAGGTCTTCCGATTTCTCACA
GGATTTTGATTACGACCAAAAATGTCGTCCTCAACAATAAAAACGGAAACAACCCAAATGTTGGTTACTTCAAGCTGAAGAAATTTTTCTCCAGCAAAAATCTCTTGGCT
TCCCCCTCCACCACCGGAACCGCCACCGGCACCACCAGGTCCACCGCCGCTGCCGCCGCATCGATATCTACCGCGGGTGTCAACGGTTGTGGGAGTAGAAGAAGAGCAGC
CCCAAATTCTGCAATTACGGGTAAAAAGAGTGTTTCTGAAAATGGGAATTGTGGTTCATTTAACGTTGTGGATTTAGATCCGCCGTTGCCGGTGGTCCGGCGAGTGCAGA
AGGCCGGAGAAGAAAGAGGGGAAACGGAGAATCTTTGGAAGAGAAGGTCAGGTGGGATTGTATTGCAGAGCTTACAGATTCAGCAAACCCATCTTCCAAAGCATCGGCTT
CAGATTACGACTGTTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGDRYNRFNPQNVRHKHMFLPMLCSKPAIKDGRPPRCDRDRSESFSGDPLSPRIGCMGQVKRNNRVAGLPISHRILITTKNVVLNNKNGNNPNVGYFKLKKFFSSKNLLA
SPSTTGTATGTTRSTAAAAASISTAGVNGCGSRRRAAPNSAITGKKSVSENGNCGSFNVVDLDPPLPVVRRVQKAGEERGETENLWKRRSGGIVLQSLQIQQTHLPKHRL
QITTV

Lsi09G009700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome