; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G009740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G009740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontransmembrane protein 50A
Genome locationchr09:12972158..12984924
RNA-Seq ExpressionLsi09G009740
SyntenyLsi09G009740
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007919 - Uncharacterised protein family UPF0220


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140320.1 transmembrane protein 50A [Cucumis sativus]5.8e-6893.01Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVK GPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_008460472.1 PREDICTED: transmembrane protein 50A [Cucumis melo]1.5e-6893.71Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022141734.1 transmembrane protein 50A [Momordica charantia]7.5e-6892.31Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDS+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_022993057.1 transmembrane protein 50A [Cucurbita maxima]3.4e-6893.01Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

XP_038874577.1 transmembrane protein 50A [Benincasa hispida]1.2e-6893.71Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

TrEMBL top hitse value%identityAlignment
A0A1S3CCJ8 transmembrane protein 50A7.4e-6993.71Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1CJN8 transmembrane protein 50A3.7e-6892.31Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDS+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1FCW9 transmembrane protein 50A-like8.1e-6892.31Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFAS AALMFNCVR+EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1JKY2 transmembrane protein 50A-like3.1e-6792.31Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTG S WTGVAGVLQCVFVLVSGLIYWTSH+E
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

A0A6J1JRP9 transmembrane protein 50A1.6e-6893.01Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+EDIDYSPYEEGEW        RLKLWLFFAYVVSFVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

SwissProt top hitse value%identityAlignment
A9CAZ8 Transmembrane protein 50B2.9e-0628.28Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V    +    YE G            ++WLF  +++ F SL
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL

Query:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
         AS+ +L   + V     V+ G+A   Q   +  S LIY    +E
Subjt:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

O95807 Transmembrane protein 50A1.1e-0830.53Show/hide
Query:  AGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVK
        AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y EG            ++WLF  ++++F SL AS+ +L    V K
Subjt:  AGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVK

Query:  TGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
            V+ G+A   Q  F+   GL++    +E
Subjt:  TGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

P56557 Transmembrane protein 50B2.9e-0628.28Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V    +    YE G            ++WLF  +++ F SL
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL

Query:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
         AS+ +L   + V     V+ G+A   Q   +  S LIY    +E
Subjt:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Q3SZL9 Transmembrane protein 50B2.9e-0628.28Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V    +    YE G            ++WLF  +++ F SL
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL

Query:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
         AS+ +L   + V     V+ G+A   Q   +  S LIY    +E
Subjt:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Q9CXL1 Transmembrane protein 50A6.3e-0929.66Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL
        MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y EG            ++WLF  ++++F SL
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSL

Query:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
         AS+ +L    V K    V+ G+A   Q  F+   GL++    +E
Subjt:  AASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Arabidopsis top hitse value%identityAlignment
AT1G36980.1 unknown protein1.3e-6582.52Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V F+HYLPGIFAS  ALMFNCVRKEDIDYSPY+EGEW        RLKLWLF AYVV+FVSLAA
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAA

Query:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE
        SVGLLIQDSVVKTGPS WTGVAGV QCVFVL+SGL+YWTSHSE
Subjt:  SVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCTGT
CTCCTTCCTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGA
GTACTGACGTTTCCCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTA
GTTAAAACTGGGCCGTCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATTTAATCCAAAAAAAATAAAAAAAAAAATAAATTTGTCCAACATTCGGCAAAGATATATTTCCCCGAATATCAGAGCTTCAAGGGAAGGTAGATGGGAGTTTTAATATT
GGGCAGCAAAAGGGTGGTGAGCCTGTGAGGTTTGCGATCATTCAGTTCACATCACACTAGCCTCTCCAAATCGATCCGCTTCGAACTACTTGCGTAAGGAGAAGGCAAAA
AGAAAGAACCCCCGAATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGCGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTTGTCTG
CAGTTCTGTTGCTGTCTCCTTCCTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACG
AGGAGGGCGAATGGAGTACTGACGTTTCCCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTG
ATACAAGATTCAGTAGTTAAAACTGGGCCGTCAGTGTGGACAGGAGTCGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTC
GGAGTAATTATGCACTAAGACCTCAGAAGCTGAAGAGTTACCAACTGCATAGAGCTCTAGTGGACTGCAATATCGAGTCATTTGTGTCTATTGACCTGAACCCAAAAGGC
TTTTTACTTCTTGTAAATGTCATGTTAATCTTAAGCTGGAACTATGTCTATATGTCTTTATAAATTCAATATAAGTGAGCCACATATTTAATGTTTCAGCCATTTCAGTG
TTGTTTTCTTATCATCTATTTCCTTAGAACGGATATGATATGATGCAGGAAGGTTAGTTTAGTTTAGTTTTTGTTCGTTTATTCTTCCAAAATCAAAATGCTGTGAGTGC
AAAAGAAAAACTAAAATATAACTATGGTCATAGAGAACCCATTCACAGTAAATTTAGAGAAAGTTATTGTCATTTGAAAACAAAAATTACCAATCC
Protein sequenceShow/hide protein sequence
MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWSTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSV
VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE