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Lsi09G009850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G009850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L23
Genome locationchr09:13234833..13250324
RNA-Seq ExpressionLsi09G009850
SyntenyLsi09G009850
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000218 - Ribosomal protein L14P
IPR036853 - Ribosomal protein L14 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047595.1 uncharacterized protein E6C27_scaffold115G00630 [Cucumis melo var. makuwa]6.7e-1138.68Show/hide
Query:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA
        + F VNI + + +C +W++DLI C HACI++S R L+ H Y NKF+ +S +  LY     P G  +    +    +  IL P+ KR  GR +KKR TS  
Subjt:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA

Query:  ERSRNV
        E+  +V
Subjt:  ERSRNV

KAA0066503.1 uncharacterized protein E6C27_scaffold25G00500 [Cucumis melo var. makuwa]1.5e-1041.67Show/hide
Query:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTID--DVPILRPKFKRVVGRLRKKRITS
        + F VNI + + +C +W++DLI C HACI++S R L+ H Y +KF+ +S    LY     P G  S N I  T    +  IL P+ KR  GRL+KKR TS
Subjt:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTID--DVPILRPKFKRVVGRLRKKRITS

Query:  LAERSRNV
          E+   V
Subjt:  LAERSRNV

TYK29863.1 MuDRA-like transposase [Cucumis melo var. makuwa]1.5e-1039.22Show/hide
Query:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA
        + F VNI + + +C +W++DLI C HACI++S R L+ H Y +KF+ +S +  LY     P G  +    +    +  IL P+ KR  GRL KKR TS  
Subjt:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA

Query:  ER
        E+
Subjt:  ER

XP_008448115.1 PREDICTED: uncharacterized protein LOC103490404 [Cucumis melo]7.9e-1235.38Show/hide
Query:  LTDSWSVAVSLYGSDGIKSDHDK-HFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDV
        L  S S+ +S       +  H K  F +NI + + +C +W++DLI C HACI++S R L+ H Y++KF+ +S +  LY     P G  +    +    + 
Subjt:  LTDSWSVAVSLYGSDGIKSDHDK-HFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDV

Query:  PILRPKFKRVVGRLRKKRITSLAERSRNVN
         IL P+ KR  GRL+KKR TS  E+   V+
Subjt:  PILRPKFKRVVGRLRKKRITSLAERSRNVN

XP_022157216.1 uncharacterized protein LOC111023978 [Momordica charantia]3.7e-1744.86Show/hide
Query:  DKHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSL
        D+HF VNI  C+    +W++D I C HAC++IS+RGL  HS+V+KF+ + T+Q LY  +VHP G   +    +  DD  IL P  KR  GR RKKR+ S 
Subjt:  DKHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSL

Query:  AERSRNV
         E +  V
Subjt:  AERSRNV

TrEMBL top hitse value%identityAlignment
A0A1S3BIZ2 uncharacterized protein LOC1034904043.8e-1235.38Show/hide
Query:  LTDSWSVAVSLYGSDGIKSDHDK-HFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDV
        L  S S+ +S       +  H K  F +NI + + +C +W++DLI C HACI++S R L+ H Y++KF+ +S +  LY     P G  +    +    + 
Subjt:  LTDSWSVAVSLYGSDGIKSDHDK-HFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDV

Query:  PILRPKFKRVVGRLRKKRITSLAERSRNVN
         IL P+ KR  GRL+KKR TS  E+   V+
Subjt:  PILRPKFKRVVGRLRKKRITSLAERSRNVN

A0A5A7U1T3 Uncharacterized protein3.2e-1138.68Show/hide
Query:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA
        + F VNI + + +C +W++DLI C HACI++S R L+ H Y NKF+ +S +  LY     P G  +    +    +  IL P+ KR  GR +KKR TS  
Subjt:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA

Query:  ERSRNV
        E+  +V
Subjt:  ERSRNV

A0A5A7VEN5 Uncharacterized protein7.2e-1141.67Show/hide
Query:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTID--DVPILRPKFKRVVGRLRKKRITS
        + F VNI + + +C +W++DLI C HACI++S R L+ H Y +KF+ +S    LY     P G  S N I  T    +  IL P+ KR  GRL+KKR TS
Subjt:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTID--DVPILRPKFKRVVGRLRKKRITS

Query:  LAERSRNV
          E+   V
Subjt:  LAERSRNV

A0A5D3E198 MuDRA-like transposase7.2e-1139.22Show/hide
Query:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA
        + F VNI + + +C +W++DLI C HACI++S R L+ H Y +KF+ +S +  LY     P G  +    +    +  IL P+ KR  GRL KKR TS  
Subjt:  KHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLA

Query:  ER
        E+
Subjt:  ER

A0A6J1DXB4 uncharacterized protein LOC1110239781.8e-1744.86Show/hide
Query:  DKHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSL
        D+HF VNI  C+    +W++D I C HAC++IS+RGL  HS+V+KF+ + T+Q LY  +VHP G   +    +  DD  IL P  KR  GR RKKR+ S 
Subjt:  DKHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRISTIQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSL

Query:  AERSRNV
         E +  V
Subjt:  AERSRNV

SwissProt top hitse value%identityAlignment
P49690 60S ribosomal protein L231.6e-1084.62Show/hide
Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG KG L
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL

Q07760 60S ribosomal protein L235.3e-1149.45Show/hide
Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM
        S GNKFR+SLGLP+AAT+N  DNTGAKNLYIISVKG KG L          + +   KK     P+L+   M  VV      +R KDG+ M
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM

Q3T057 60S ribosomal protein L232.9e-0947.25Show/hide
Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM
        S G KFRISLGLP+ A +N  DNTGAKNLYIISVKG KG L          + +   KK     PEL+      VV     S+R KDG+ +
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM

Q5REU2 60S ribosomal protein L232.2e-0947.25Show/hide
Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM
        S G KFRISLGLP+ A +N  DNTGAKNLYIISVKG KG L          + +   KK     PEL+      VV     S+R KDG+ +
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM

Q6PC14 60S ribosomal protein L232.9e-0947.25Show/hide
Query:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM
        S G KFRISLGLP+ A +N  DNTGAKNLYIISVKG KG L          + +   KK     PEL+      VV     S+R KDG+ +
Subjt:  SIGNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL----------LTILLYKKAMDVGPELKGSSMFLVVC--NLSFRYKDGLVM

Arabidopsis top hitse value%identityAlignment
AT1G04480.1 Ribosomal protein L14p/L23e family protein1.1e-1184.62Show/hide
Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG KG L
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL

AT2G33370.1 Ribosomal protein L14p/L23e family protein1.1e-1184.62Show/hide
Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG KG L
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL

AT3G04400.1 Ribosomal protein L14p/L23e family protein1.1e-1184.62Show/hide
Query:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL
        GNKFR+SLGLP+AATVN  DNTGAKNLYIISVKG KG L
Subjt:  GNKFRISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL

AT3G04400.2 Ribosomal protein L14p/L23e family protein2.5e-0882.35Show/hide
Query:  ISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL
        +SLGLP+AATVN  DNTGAKNLYIISVKG KG L
Subjt:  ISLGLPMAATVNYVDNTGAKNLYIISVKGFKGSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTCCTTCTCAGATGGCGGTGGAAATGGTGGAGAAAGTGGTGTATTTCTATGTGCCTGAATGTGCTCTGACGCATAGGATAAGGTCTTGCGTCTGTCAAACGTT
ACCTTTGACCGATAGTTGGTCGGTTGCAGTGTCGCTATATGGGTCAGATGGCATAAAATCTGACCATGACAAGCATTTTGAAGTAAACATTAGGGATTGTAGTTACACAT
GCGGGAGATGGGAAATGGATCTAATCCTATGCCCACATGCATGCATTTCTATAAGTCAGAGAGGACTGCACCCACATTCATACGTTAATAAATTTCATCGTATTTCCACT
ATTCAGAAGCTTTATGGTGGGGATGTGCACCCAACTGGGTTCTCGTCCCATAACCCTATCTCATTGACCATTGATGATGTTCCAATTCTCCGTCCAAAATTTAAACGCGT
TGTTGGAAGGCTGAGGAAGAAAAGGATAACATCCCTTGCAGAAAGGAGTCGAAATGTTAATAAACAAATGTTTCTCATTGTTTCTATCTATGTTTTTAATAAGAATCCTC
AGGCACAATCGTGTAATGGAAATTTGAATAAGGGTTTCAGATTCTTCCCTTTTCCGTTCGTTGGCCACTCTAGCCACCATGGTTTGTCAGCTCCCACCGAGTGTCCGTCC
GTTAGGCCATTCGTGAAGTTGTGGGTCTCGTCGTCAAGTCGTGAAGTTGTCGTTCCCTTTGTCTTGTCCAAATCTGCCGTTCGGGGAAGTCGTGGGTCTGGCCATGCGTG
CTCTACTCCCGTCGCCGTTCGTGAAGTCGTTGGTCGTGAGTTTGTCAAATCTCGTCACCGTTCGTTAGATCTGCCGTTCGTGAAGTCGTGCGTTCATCAGCTACCAGTCG
TGGATCTCGTCATGGGCTTAGATCTGCCATGTGAGCTGCTGGTTGTTATGAAGGCTTATGAGGCATCCATAGGGAACAAGTTTCGGATATCACTGGGTCTTCCAATGGCT
GCTACTGTCAACTATGTAGACAACACGGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGTTCAAAGGTAGTCTCTTGACGATTTTGTTGTATAAGAAAGCAATGGA
TGTTGGCCCTGAATTGAAAGGATCTTCTATGTTTCTTGTGGTGTGTAATCTCTCATTCAGATACAAAGATGGTCTGGTGATGGTTACGACGGGTGGAGCGGTAGAAGGTG
TGATGTTTGAGTGGGGGTGGGTGGGGCTGGGAGAAGATGTGAGGGTCGACGGGGTGTTACATCAGGAATGCTTGAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTCCTTCTCAGATGGCGGTGGAAATGGTGGAGAAAGTGGTGTATTTCTATGTGCCTGAATGTGCTCTGACGCATAGGATAAGGTCTTGCGTCTGTCAAACGTT
ACCTTTGACCGATAGTTGGTCGGTTGCAGTGTCGCTATATGGGTCAGATGGCATAAAATCTGACCATGACAAGCATTTTGAAGTAAACATTAGGGATTGTAGTTACACAT
GCGGGAGATGGGAAATGGATCTAATCCTATGCCCACATGCATGCATTTCTATAAGTCAGAGAGGACTGCACCCACATTCATACGTTAATAAATTTCATCGTATTTCCACT
ATTCAGAAGCTTTATGGTGGGGATGTGCACCCAACTGGGTTCTCGTCCCATAACCCTATCTCATTGACCATTGATGATGTTCCAATTCTCCGTCCAAAATTTAAACGCGT
TGTTGGAAGGCTGAGGAAGAAAAGGATAACATCCCTTGCAGAAAGGAGTCGAAATGTTAATAAACAAATGTTTCTCATTGTTTCTATCTATGTTTTTAATAAGAATCCTC
AGGCACAATCGTGTAATGGAAATTTGAATAAGGGTTTCAGATTCTTCCCTTTTCCGTTCGTTGGCCACTCTAGCCACCATGGTTTGTCAGCTCCCACCGAGTGTCCGTCC
GTTAGGCCATTCGTGAAGTTGTGGGTCTCGTCGTCAAGTCGTGAAGTTGTCGTTCCCTTTGTCTTGTCCAAATCTGCCGTTCGGGGAAGTCGTGGGTCTGGCCATGCGTG
CTCTACTCCCGTCGCCGTTCGTGAAGTCGTTGGTCGTGAGTTTGTCAAATCTCGTCACCGTTCGTTAGATCTGCCGTTCGTGAAGTCGTGCGTTCATCAGCTACCAGTCG
TGGATCTCGTCATGGGCTTAGATCTGCCATGTGAGCTGCTGGTTGTTATGAAGGCTTATGAGGCATCCATAGGGAACAAGTTTCGGATATCACTGGGTCTTCCAATGGCT
GCTACTGTCAACTATGTAGACAACACGGGAGCTAAGAATCTCTACATCATTTCAGTGAAAGGGTTCAAAGGTAGTCTCTTGACGATTTTGTTGTATAAGAAAGCAATGGA
TGTTGGCCCTGAATTGAAAGGATCTTCTATGTTTCTTGTGGTGTGTAATCTCTCATTCAGATACAAAGATGGTCTGGTGATGGTTACGACGGGTGGAGCGGTAGAAGGTG
TGATGTTTGAGTGGGGGTGGGTGGGGCTGGGAGAAGATGTGAGGGTCGACGGGGTGTTACATCAGGAATGCTTGAATGCTTGA
Protein sequenceShow/hide protein sequence
MAAPSQMAVEMVEKVVYFYVPECALTHRIRSCVCQTLPLTDSWSVAVSLYGSDGIKSDHDKHFEVNIRDCSYTCGRWEMDLILCPHACISISQRGLHPHSYVNKFHRIST
IQKLYGGDVHPTGFSSHNPISLTIDDVPILRPKFKRVVGRLRKKRITSLAERSRNVNKQMFLIVSIYVFNKNPQAQSCNGNLNKGFRFFPFPFVGHSSHHGLSAPTECPS
VRPFVKLWVSSSSREVVVPFVLSKSAVRGSRGSGHACSTPVAVREVVGREFVKSRHRSLDLPFVKSCVHQLPVVDLVMGLDLPCELLVVMKAYEASIGNKFRISLGLPMA
ATVNYVDNTGAKNLYIISVKGFKGSLLTILLYKKAMDVGPELKGSSMFLVVCNLSFRYKDGLVMVTTGGAVEGVMFEWGWVGLGEDVRVDGVLHQECLNA