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Lsi09G009880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G009880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease H
Genome locationchr09:13359430..13360281
RNA-Seq ExpressionLsi09G009880
SyntenyLsi09G009880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131653.1 uncharacterized protein LOC111004780 [Momordica charantia]3.7e-3443.75Show/hide
Query:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK----------
        KGHS++QC  F ++VQELLDS  L V+     KS+ +   +  E+    E S  SL+ KPLTIFY EK    +   KPITI VP+ FE +          
Subjt:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK----------

Query:  --------SSKAIPWNYEYKYNSKD------KGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQEFLRLVKQSDYKTYVPSDITTDNLDNIVGSITIS
                +  A   N E     K+      KGK KL+  I   + E ++V++   K+  SE+  Q+FL+LVKQS+YK +V  DIT DNL N+VG+IT S
Subjt:  --------SSKAIPWNYEYKYNSKD------KGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQEFLRLVKQSDYKTYVPSDITTDNLDNIVGSITIS

Query:  SSITFTDDEIPPESMGHTKALHIT
        SSITFTD+EIPPES  HTK LHI+
Subjt:  SSITFTDDEIPPESMGHTKALHIT

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]7.0e-3336.3Show/hide
Query:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE
        KGH+++QC  F   VQELLDS  L V+     K     E  +  E S  E S  +L+ K LTIFY EKP       KPITI VP+PFEYKSSKA+PW YE
Subjt:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE

Query:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ
                                                                   K     KGK KL + +   + E ++V++   K+   E+ IQ
Subjt:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ

Query:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT
        EFL+LVKQS+YK                                   +V  DIT DNL N+VG+IT SSSITFTD+EIPPE  GHTKALHI+
Subjt:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.8e-3335.1Show/hide
Query:  TMTVYYIHMEKGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK
        ++T  +    KGHS++QC  F  KVQELLDS  L         S  +   +  E+    E S  SL+ KPLTIFY+EKP   +   KP  I VP PFEYK
Subjt:  TMTVYYIHMEKGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK

Query:  SSKAIPWNYE----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEV
        SSKA+PW YE                                                           K     KGK KL +     + E ++V++   
Subjt:  SSKAIPWNYE----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEV

Query:  KEPASEDGIQEFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALH
        K+P SE+  QEFL+LVKQS+YK                                   +V  DIT DNL N+VG+IT SSSI+FTD+EIPPE  GHTKALH
Subjt:  KEPASEDGIQEFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALH

Query:  IT
        I+
Subjt:  IT

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]3.4e-2735.61Show/hide
Query:  KVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYEYKY----------
        KVQELLDS  L      V  S ++   +  E+    E S  S++ K LTIFY+EKP   +   KPITI VP+PFEYKSSKA+PW YE K           
Subjt:  KVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYEYKY----------

Query:  ------------------------------NSKDKGKVKLSDAIDCRIEEPLLVR---NQEVKEPASEDGIQEFLRLVKQSDYK----------------
                                       + +K K K S+    ++EE    +   +++V +   E+  QEFL+LVKQ++YK                
Subjt:  ------------------------------NSKDKGKVKLSDAIDCRIEEPLLVR---NQEVKEPASEDGIQEFLRLVKQSDYK----------------

Query:  ------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT
                           +V  DIT DNL N+VG+I  SS ITFTD+EIPPE  GHTKALHI+
Subjt:  ------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]3.7e-3435.96Show/hide
Query:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE
        KGHS++QC  F  KVQELLDS  L      V  S ++  I+  E+ S  E S  +L+ K LTIFY EKP+      KPITI VP+PFEYKSSKA+PW Y+
Subjt:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE

Query:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ
                                                                   K     KGK KL + +   + E ++V++   K+P SE+  Q
Subjt:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ

Query:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT
        E L+LVKQS+YK                                   +V  DIT DNL N+VG+I+ +SSITFTD+EIPPE  GHTKALHI+
Subjt:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT

TrEMBL top hitse value%identityAlignment
A0A6J1BU14 uncharacterized protein LOC1110047801.8e-3443.75Show/hide
Query:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK----------
        KGHS++QC  F ++VQELLDS  L V+     KS+ +   +  E+    E S  SL+ KPLTIFY EK    +   KPITI VP+ FE +          
Subjt:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK----------

Query:  --------SSKAIPWNYEYKYNSKD------KGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQEFLRLVKQSDYKTYVPSDITTDNLDNIVGSITIS
                +  A   N E     K+      KGK KL+  I   + E ++V++   K+  SE+  Q+FL+LVKQS+YK +V  DIT DNL N+VG+IT S
Subjt:  --------SSKAIPWNYEYKYNSKD------KGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQEFLRLVKQSDYKTYVPSDITTDNLDNIVGSITIS

Query:  SSITFTDDEIPPESMGHTKALHIT
        SSITFTD+EIPPES  HTK LHI+
Subjt:  SSITFTDDEIPPESMGHTKALHIT

A0A6J1CNY7 Ribonuclease H3.4e-3336.3Show/hide
Query:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE
        KGH+++QC  F   VQELLDS  L V+     K     E  +  E S  E S  +L+ K LTIFY EKP       KPITI VP+PFEYKSSKA+PW YE
Subjt:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE

Query:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ
                                                                   K     KGK KL + +   + E ++V++   K+   E+ IQ
Subjt:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ

Query:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT
        EFL+LVKQS+YK                                   +V  DIT DNL N+VG+IT SSSITFTD+EIPPE  GHTKALHI+
Subjt:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT

A0A6J1D099 Ribonuclease H8.9e-3435.1Show/hide
Query:  TMTVYYIHMEKGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK
        ++T  +    KGHS++QC  F  KVQELLDS  L         S  +   +  E+    E S  SL+ KPLTIFY+EKP   +   KP  I VP PFEYK
Subjt:  TMTVYYIHMEKGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYK

Query:  SSKAIPWNYE----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEV
        SSKA+PW YE                                                           K     KGK KL +     + E ++V++   
Subjt:  SSKAIPWNYE----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEV

Query:  KEPASEDGIQEFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALH
        K+P SE+  QEFL+LVKQS+YK                                   +V  DIT DNL N+VG+IT SSSI+FTD+EIPPE  GHTKALH
Subjt:  KEPASEDGIQEFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALH

Query:  IT
        I+
Subjt:  IT

A0A6J1D7C7 Ribonuclease H1.6e-2735.61Show/hide
Query:  KVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYEYKY----------
        KVQELLDS  L      V  S ++   +  E+    E S  S++ K LTIFY+EKP   +   KPITI VP+PFEYKSSKA+PW YE K           
Subjt:  KVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYEYKY----------

Query:  ------------------------------NSKDKGKVKLSDAIDCRIEEPLLVR---NQEVKEPASEDGIQEFLRLVKQSDYK----------------
                                       + +K K K S+    ++EE    +   +++V +   E+  QEFL+LVKQ++YK                
Subjt:  ------------------------------NSKDKGKVKLSDAIDCRIEEPLLVR---NQEVKEPASEDGIQEFLRLVKQSDYK----------------

Query:  ------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT
                           +V  DIT DNL N+VG+I  SS ITFTD+EIPPE  GHTKALHI+
Subjt:  ------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT

A0A6J1E2J7 Ribonuclease H1.8e-3435.96Show/hide
Query:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE
        KGHS++QC  F  KVQELLDS  L      V  S ++  I+  E+ S  E S  +L+ K LTIFY EKP+      KPITI VP+PFEYKSSKA+PW Y+
Subjt:  KGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSKAIPWNYE

Query:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ
                                                                   K     KGK KL + +   + E ++V++   K+P SE+  Q
Subjt:  ----------------------------------------------------------YKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQ

Query:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT
        E L+LVKQS+YK                                   +V  DIT DNL N+VG+I+ +SSITFTD+EIPPE  GHTKALHI+
Subjt:  EFLRLVKQSDYK----------------------------------TYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTCCTCGATAGCCAATACCATGACAGTTTATTATATTCATATGGAAAAAGGTCACTCTATTGACCAGTGCCCTCATTTTCCCCAGAAGGTACAAGAATTATTAGA
TTCTCATTTTCTAATAGTCTCACAGAAGGTAGTTGGAAAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTTTCAACAGGTGAATGCTCGAAGGTTTCTCTGG
AGCGGAAACCATTAACGATCTTTTACAAGGAAAAACCCAGTACTACCACTTCTAAACCAAAACCAATTACCATACCGGTTCCATCTCCATTTGAGTATAAAAGCTCAAAA
GCAATTCCATGGAATTATGAATACAAGTATAATAGCAAGGATAAAGGAAAAGTCAAGCTTAGTGATGCCATTGATTGCAGGATAGAGGAACCACTGTTGGTGAGAAATCA
AGAAGTAAAGGAGCCAGCATCTGAAGATGGCATCCAAGAGTTTTTAAGACTTGTAAAACAAAGTGATTATAAAACTTATGTTCCATCAGACATTACAACAGACAATTTAG
ACAACATTGTTGGCAGTATAACAATATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCTGAGAGCATGGGTCACACAAAGGCCTTGCATATTACA
mRNA sequenceShow/hide mRNA sequence
ATGATGTCCTCGATAGCCAATACCATGACAGTTTATTATATTCATATGGAAAAAGGTCACTCTATTGACCAGTGCCCTCATTTTCCCCAGAAGGTACAAGAATTATTAGA
TTCTCATTTTCTAATAGTCTCACAGAAGGTAGTTGGAAAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTTTCAACAGGTGAATGCTCGAAGGTTTCTCTGG
AGCGGAAACCATTAACGATCTTTTACAAGGAAAAACCCAGTACTACCACTTCTAAACCAAAACCAATTACCATACCGGTTCCATCTCCATTTGAGTATAAAAGCTCAAAA
GCAATTCCATGGAATTATGAATACAAGTATAATAGCAAGGATAAAGGAAAAGTCAAGCTTAGTGATGCCATTGATTGCAGGATAGAGGAACCACTGTTGGTGAGAAATCA
AGAAGTAAAGGAGCCAGCATCTGAAGATGGCATCCAAGAGTTTTTAAGACTTGTAAAACAAAGTGATTATAAAACTTATGTTCCATCAGACATTACAACAGACAATTTAG
ACAACATTGTTGGCAGTATAACAATATCAAGTTCCATAACTTTCACTGATGATGAGATACCGCCTGAGAGCATGGGTCACACAAAGGCCTTGCATATTACA
Protein sequenceShow/hide protein sequence
MMSSIANTMTVYYIHMEKGHSIDQCPHFPQKVQELLDSHFLIVSQKVVGKSEREHEIDAAEEFSTGECSKVSLERKPLTIFYKEKPSTTTSKPKPITIPVPSPFEYKSSK
AIPWNYEYKYNSKDKGKVKLSDAIDCRIEEPLLVRNQEVKEPASEDGIQEFLRLVKQSDYKTYVPSDITTDNLDNIVGSITISSSITFTDDEIPPESMGHTKALHIT