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Lsi09G009990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G009990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPMD domain-containing protein
Genome locationchr09:13616348..13618995
RNA-Seq ExpressionLsi09G009990
SyntenyLsi09G009990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8363055.1 hypothetical protein BUALT_BualtUnG0008900 [Buddleja alternifolia]7.3e-4969.94Show/hide
Query:  VGQGGHGIEQVRGWVGMGCV-------RGGHG-----GCRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQR
        +G  G G+  V G  G   +        GG G     G RDESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP ARW+L +KAA A  P RGL QR
Subjt:  VGQGGHGIEQVRGWVGMGCV-------RGGHG-----GCRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQR

Query:  HVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
        HVPLGA  PLL VG R  G  VASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  HVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY

KAG8363060.1 hypothetical protein BUALT_BualtUnG0009600 [Buddleja alternifolia]7.3e-4969.94Show/hide
Query:  VGQGGHGIEQVRGWVGMGCV-------RGGHG-----GCRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQR
        +G  G G+  V G  G   +        GG G     G RDESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP ARW+L +KAA A  P RGL QR
Subjt:  VGQGGHGIEQVRGWVGMGCV-------RGGHG-----GCRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQR

Query:  HVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
        HVPLGA  PLL VG R  G  VASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  HVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY

KAG8375836.1 hypothetical protein BUALT_Bualt09G0000500 [Buddleja alternifolia]4.3e-4980.15Show/hide
Query:  VRGGHGG--C--RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPD
        VRG  GG  C   DESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP ARW+L +KAA A  P RGL QRHVPLGA  PLL VG R  G  VASSPD
Subjt:  VRGGHGG--C--RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPD

Query:  SDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
        SDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  SDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY

OPH47798.1 hypothetical protein B4U81_25600, partial [Vibrio campbellii]9.5e-4983.87Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH
        R  S RRRAESQ IVAARPLC LQYPVAYLSRLQRILP ARW+L + A  A  P  GL QRHVPLGA RPLLLVG RA GACVASSPDSDLEAFSHNPAH
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH

Query:  GSFAPLAFQPSAMTNCANQRFLSY
        GSFAPLAFQPSAMTNCANQRFLSY
Subjt:  GSFAPLAFQPSAMTNCANQRFLSY

TXG51762.1 hypothetical protein EZV62_024286 [Acer yangbiense]1.2e-4883.2Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACV-ASSPDSDLEAFSHNPA
        RDESER RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+LR+KAA A  P  GL QRHVPLG  R LL VG RA G     SSPDSDLEAFSHNPA
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACV-ASSPDSDLEAFSHNPA

Query:  HGSFAPLAFQPSAMTNCANQRFLSY
        HGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  HGSFAPLAFQPSAMTNCANQRFLSY

TrEMBL top hitse value%identityAlignment
A0A1Q3DGA9 Uncharacterized protein (Fragment)1.0e-4884.68Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH
        RDESER+RAESQ IVAAR LCHLQYPVAYLSRL+RILP A    R+KAA    PSRGL QRHVPLG  RPLLLVG RA GACVASSPDSDLEAFSHNPAH
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH

Query:  GSFAPLAFQPSAMTNCANQRFLSY
        GSFAPLAFQPSAMTNCANQRFLSY
Subjt:  GSFAPLAFQPSAMTNCANQRFLSY

A0A2G2UUV0 Uncharacterized protein2.3e-4877.78Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGA-----------GRPLLLVGNRAMGACVASSPDS
        RD+ ER+RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARWKL +KAA AT   R LSQ+HVPLGA            RPLL VG R  GACVASSPDS
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGA-----------GRPLLLVGNRAMGACVASSPDS

Query:  DLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
        DLEAFSHNPAHGSFAPLAFQPSAMTN  NQRFLSY
Subjt:  DLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY

A0A5C7H5R6 Uncharacterized protein6.0e-4983.2Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACV-ASSPDSDLEAFSHNPA
        RDESER RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+LR+KAA A  P  GL QRHVPLG  R LL VG RA G     SSPDSDLEAFSHNPA
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACV-ASSPDSDLEAFSHNPA

Query:  HGSFAPLAFQPSAMTNCANQRFLSY
        HGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  HGSFAPLAFQPSAMTNCANQRFLSY

A0A6A1V4X9 Uncharacterized protein3.3e-4786.09Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH
        RDES+R RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+L +KAA A  P RGL QRHVPLGAG PLL VGNRA GA VASSPDSDLEAFSHNP H
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH

Query:  GSFAPLAFQPSAMTN
        GSFAPLAFQPSAMTN
Subjt:  GSFAPLAFQPSAMTN

A0A6A1VJA4 Uncharacterized protein3.3e-4786.09Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH
        RDES+R RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+L +KAA A  P RGL QRHVPLGAG PLL VGNRA GA VASSPDSDLEAFSHNP H
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAH

Query:  GSFAPLAFQPSAMTN
        GSFAPLAFQPSAMTN
Subjt:  GSFAPLAFQPSAMTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTTGGGTGTCACGACACACAAGAGGTCGGTGTCATGGTACACACAGGGTGGTTGTCCCAGGTGGGTGTCACGACACATTCTTTAGACAAAATAGTCTACTTGAT
ATACACTCGACTTGATACGCGGAGAGGTGCAAGGTGGGTGAGCAGGCGCGGGGGTGGGGCAGGTGGGCATGGGCGCCCACAGAGTGCAAGATTGGTGGGCATGGGGCGCG
CGTGGGTTGGGCAAGGTGGGCATGGCATTGAGCAGGTGCGGGGCTGGGTGGGCATGGGATGCGTGCGGGGTGGGCATGGGGGGTGCCGGGACGAATCGGAGCGACGAAGG
GCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGAAATTACG
TTACAAGGCGGCCCCCGCGACTCATCCGTCACGAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGGACGGCCCCTACTGCTGGTCGGCAATCGAGCGATGGGCGCAT
GCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAAT
CAACGGTTCCTCTCGTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTTGGGTGTCACGACACACAAGAGGTCGGTGTCATGGTACACACAGGGTGGTTGTCCCAGGTGGGTGTCACGACACATTCTTTAGACAAAATAGTCTACTTGAT
ATACACTCGACTTGATACGCGGAGAGGTGCAAGGTGGGTGAGCAGGCGCGGGGGTGGGGCAGGTGGGCATGGGCGCCCACAGAGTGCAAGATTGGTGGGCATGGGGCGCG
CGTGGGTTGGGCAAGGTGGGCATGGCATTGAGCAGGTGCGGGGCTGGGTGGGCATGGGATGCGTGCGGGGTGGGCATGGGGGGTGCCGGGACGAATCGGAGCGACGAAGG
GCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGAAATTACG
TTACAAGGCGGCCCCCGCGACTCATCCGTCACGAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGGACGGCCCCTACTGCTGGTCGGCAATCGAGCGATGGGCGCAT
GCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAAT
CAACGGTTCCTCTCGTACTAG
Protein sequenceShow/hide protein sequence
MGVGCHDTQEVGVMVHTGWLSQVGVTTHSLDKIVYLIYTRLDTRRGARWVSRRGGGAGGHGRPQSARLVGMGRAWVGQGGHGIEQVRGWVGMGCVRGGHGGCRDESERRR
AESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCAN
QRFLSY