CuGenDBv2

Gene ID	Lsi09G010170
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA/RNA polymerases superfamily protein
Genome location	chr09:14056451..14056899
RNA-Seq Expression	Lsi09G010170
Synteny	Lsi09G010170
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0090304 - nucleic acid metabolic process (biological process) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR001969 - Aspartic peptidase, active site IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055470.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

9.3e-12

48.86

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LIC+    VL+DSG+THSF+S+     L+  LE LS +LV+ TP+GDVL+   V ++ EV +   CML+DL  LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

KAA0066738.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.5e-12

47.73

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LICD    +L+DSG+THSF+S+     L+  LE LS +LV+ TP+GD+L+   V ++ EV +   CML+DL+ LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

TYK04219.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

6.5e-13

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LICD    VL+DSG+THSF+S+     LS  LE LS +LV+ TP+GD+L+   V ++ EV +   CML+DL+ LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

TYK06356.1 reverse transcriptase [Cucumis melo var. makuwa]

1.9e-12

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LICD    VL+DSG+THSF+S+     L+  LE LS +LV+ TP+GDVL+   V ++ EV +   CML+DL+ LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

9.3e-12

48.86

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LIC+    VL+DSG+THSF+S+     L+  LE LS +LV+ TP+GDVL+   V ++ EV +   CML+DL  LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UJV1 DNA/RNA polymerases superfamily protein

4.5e-12

48.86

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LIC+    VL+DSG+THSF+S+     L+  LE LS +LV+ TP+GDVL+   V ++ EV +   CML+DL  LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

A0A5D3C1H9 DNA/RNA polymerases superfamily protein

3.1e-13

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LICD    VL+DSG+THSF+S+     LS  LE LS +LV+ TP+GD+L+   V ++ EV +   CML+DL+ LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

A0A5D3C7Q2 Reverse transcriptase

9.1e-13

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LICD    VL+DSG+THSF+S+     L+  LE LS +LV+ TP+GDVL+   V ++ EV +   CML+DL+ LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

A0A5D3CCC7 DNA/RNA polymerases superfamily protein

4.5e-12

48.86

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LIC+    VL+DSG+THSF+S+     L+  LE LS +LV+ TP+GDVL+   V ++ EV +   CML+DL  LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

A0A5D3DVW9 DNA/RNA polymerases superfamily protein

1.2e-12

47.73

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Query:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE
        T+LICD    +L+DSG+THSF+S+     L+  LE LS +LV+ TP+GD+L+   V ++ EV +   CML+DL+ LEL   DVILG +
Subjt:  TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGRE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ACAGTGTTAATTTGTGATTCATCTATATATGTGTTGATTGATTCTGGTTCTACGCATTCCTTTATATCTACTAGGAATGCTGAAATGTTAAGTATGAAACTAGAATTTTT
GAGTGGTGACTTAGTAGTTAGTACCCCTATGGGAGATGTCTTAATAGCTGATTTAGTATGTAAGAATGGTGAAGTAAAGCTAAGAGATGCATGTATGCTAATTGATTTGA
TTCTGTTAGAACTTCATGAGTTTGATGTGATTTTGGGTAGGGAAGATGTTGACCAAAGGATGTATAGCGTACCTAGCTTATGTAGTTGA

mRNA sequence

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Protein sequence

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TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGREDVDQRMYSVPSLCS

Lsi09G010170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome