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Lsi09G010330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G010330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger protein JAGGED
Genome locationchr09:15097304..15097704
RNA-Seq ExpressionLsi09G010330
SyntenyLsi09G010330
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0048437 - floral organ development (biological process)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR031113 - Zinc finger protein JAGGED-like
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047421.1 zinc finger protein JAGGED [Cucumis melo var. makuwa]5.5e-3070.48Show/hide
Query:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
        RSEGSPLDLNNLPEDYIRDGKQIIEDSSS                            GHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
Subjt:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR

Query:  QGKIT
        Q + T
Subjt:  QGKIT

KGN51212.2 hypothetical protein Csa_008797 [Cucumis sativus]5.5e-3070.48Show/hide
Query:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
        RSEGSPLDLNNLPEDYIRDGKQIIEDSSS                            GHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
Subjt:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR

Query:  QGKIT
        Q + T
Subjt:  QGKIT

XP_008465782.1 PREDICTED: zinc finger protein JAGGED [Cucumis melo]2.4e-3069.81Show/hide
Query:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH
        +RSEGSPLDLNNLPEDYIRDGKQIIEDSSS                            GHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH
Subjt:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH

Query:  RQGKIT
        RQ + T
Subjt:  RQGKIT

XP_011655169.1 zinc finger protein JAGGED [Cucumis sativus]2.4e-3069.81Show/hide
Query:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH
        +RSEGSPLDLNNLPEDYIRDGKQIIEDSSS                            GHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH
Subjt:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH

Query:  RQGKIT
        RQ + T
Subjt:  RQGKIT

XP_038876123.1 zinc finger protein JAGGED-like [Benincasa hispida]1.2e-2967.92Show/hide
Query:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH
        +RSEGSPLDLNNLPEDYIRDGKQIIEDSS+                            GHRKKKSGLKEGKEE+GKVYECRFCSLKFCKSQALGGHMNRH
Subjt:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH

Query:  RQGKIT
        RQ + T
Subjt:  RQGKIT

TrEMBL top hitse value%identityAlignment
A0A0A0KTC2 C2H2-type domain-containing protein2.6e-3070.48Show/hide
Query:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
        RSEGSPLDLNNLPEDYIRDGKQIIEDSSS                            GHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
Subjt:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR

Query:  QGKIT
        Q + T
Subjt:  QGKIT

A0A1S3CQ11 zinc finger protein JAGGED1.2e-3069.81Show/hide
Query:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH
        +RSEGSPLDLNNLPEDYIRDGKQIIEDSSS                            GHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH
Subjt:  LRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRH

Query:  RQGKIT
        RQ + T
Subjt:  RQGKIT

A0A5A7U1F5 Zinc finger protein JAGGED2.6e-3070.48Show/hide
Query:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
        RSEGSPLDLNNLPEDYIRDGKQIIEDSSS                            GHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
Subjt:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR

Query:  QGKIT
        Q + T
Subjt:  QGKIT

A0A6J1GRC2 zinc finger protein JAGGED-like9.4e-2864.49Show/hide
Query:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR
        M+RS+GSPLDLNNLPEDYIRD KQIIED+S+                            GHRKKKSG KEG EESGKVYECRFCSLKFCKSQALGGHMNR
Subjt:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR

Query:  HRQGKIT
        HRQ + T
Subjt:  HRQGKIT

A0A6J1I6U1 zinc finger protein JAGGED-like9.4e-2864.49Show/hide
Query:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR
        M+RS+GSPLDLNNLPEDYIRD KQIIED+S+                            GHRKKKSG KEG EESGKVYECRFCSLKFCKSQALGGHMNR
Subjt:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR

Query:  HRQGKIT
        HRQ + T
Subjt:  HRQGKIT

SwissProt top hitse value%identityAlignment
Q6S591 Zinc finger protein JAGGED1.3e-2154.21Show/hide
Query:  LRSEGSPLDLNNLPEDYIRDG-KQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR
        +R E + LDLNNLP+D+ +DG KQ +E+ SS                           +G RKKK G KEGK+ESGKVYECRFCSLKFCKSQALGGHMNR
Subjt:  LRSEGSPLDLNNLPEDYIRDG-KQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR

Query:  HRQGKIT
        HRQ + T
Subjt:  HRQGKIT

Q6S592 Zinc finger protein JAGGED-like2.4e-1240.19Show/hide
Query:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR
        M   E + LDLNNLP+D  RD     E+  S                                   G +E + + GK YECRFCSLKF KSQALGGHMNR
Subjt:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR

Query:  HRQGKIT
        HRQ + T
Subjt:  HRQGKIT

Q9LG97 Zinc finger protein STAMENLESS 19.1e-2051.43Show/hide
Query:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR
        R EGSPLDLNNLP+++   GKQ +E S++   + +             E S++      +KK +G   GK+E+GKVYECRFCSLKFCKSQALGGHMNRHR
Subjt:  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHR

Query:  QGKIT
        Q + T
Subjt:  QGKIT

Arabidopsis top hitse value%identityAlignment
AT1G13400.1 C2H2 and C2HC zinc fingers superfamily protein1.7e-1340.19Show/hide
Query:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR
        M   E + LDLNNLP+D  RD     E+  S                                   G +E + + GK YECRFCSLKF KSQALGGHMNR
Subjt:  MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR

Query:  HRQGKIT
        HRQ + T
Subjt:  HRQGKIT

AT1G68480.1 C2H2 and C2HC zinc fingers superfamily protein9.0e-2354.21Show/hide
Query:  LRSEGSPLDLNNLPEDYIRDG-KQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR
        +R E + LDLNNLP+D+ +DG KQ +E+ SS                           +G RKKK G KEGK+ESGKVYECRFCSLKFCKSQALGGHMNR
Subjt:  LRSEGSPLDLNNLPEDYIRDG-KQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNR

Query:  HRQGKIT
        HRQ + T
Subjt:  HRQGKIT

AT3G10470.1 C2H2-type zinc finger family protein8.5e-0556.25Show/hide
Query:  GKEESGKVYECRFCSLKFCKSQALGGHMNRHR
        GK  + KV+EC  C  +F   QALGGHM RHR
Subjt:  GKEESGKVYECRFCSLKFCKSQALGGHMNRHR

AT5G04390.1 C2H2-type zinc finger family protein8.5e-0556.25Show/hide
Query:  GKEESGKVYECRFCSLKFCKSQALGGHMNRHR
        GK    KV+EC  C  +F   QALGGHM RHR
Subjt:  GKEESGKVYECRFCSLKFCKSQALGGHMNRHR

AT5G27880.1 C2H2 and C2HC zinc fingers superfamily protein1.1e-0445.24Show/hide
Query:  RKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHRQ
        R+ +  +K    +S K+Y C FC   F  SQALGGH N H+Q
Subjt:  RKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCGATCCGAGGGGAGCCCATTAGACCTCAACAACTTACCTGAAGATTATATCAGAGATGGGAAACAGATTATTGAAGATAGCTCTAGTGGTAAACGAAATAAAAG
TATTAAAATGATGATTTGGGAGTTAATAAAATGGTGGGAAGAGTTGAGTAAAATGGTTTGTTTTGCAGGTCATCGGAAAAAGAAAAGTGGGTTGAAAGAGGGAAAAGAGG
AGTCCGGAAAAGTGTATGAATGCAGGTTTTGTTCACTCAAGTTTTGCAAATCCCAGGCTCTTGGTGGCCACATGAACCGCCACCGCCAAGGCAAAATTACTACTCTAATT
TTTTTTTTTTTTTATATTTATTATTATTATTATTATTTTAATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCGATCCGAGGGGAGCCCATTAGACCTCAACAACTTACCTGAAGATTATATCAGAGATGGGAAACAGATTATTGAAGATAGCTCTAGTGGTAAACGAAATAAAAG
TATTAAAATGATGATTTGGGAGTTAATAAAATGGTGGGAAGAGTTGAGTAAAATGGTTTGTTTTGCAGGTCATCGGAAAAAGAAAAGTGGGTTGAAAGAGGGAAAAGAGG
AGTCCGGAAAAGTGTATGAATGCAGGTTTTGTTCACTCAAGTTTTGCAAATCCCAGGCTCTTGGTGGCCACATGAACCGCCACCGCCAAGGCAAAATTACTACTCTAATT
TTTTTTTTTTTTTATATTTATTATTATTATTATTATTTTAATGAATGA
Protein sequenceShow/hide protein sequence
MLRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGKRNKSIKMMIWELIKWWEELSKMVCFAGHRKKKSGLKEGKEESGKVYECRFCSLKFCKSQALGGHMNRHRQGKITTLI
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