CuGenDBv2

Gene ID	Lsi09G010340
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger protein JAGGED
Genome location	chr09:15097760..15099220
RNA-Seq Expression	Lsi09G010340
Synteny	Lsi09G010340
Gene Ontology terms	GO:0001522 - pseudouridine synthesis (biological process) GO:0007275 - multicellular organism development (biological process) GO:0003723 - RNA binding (molecular function) GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domains	IPR031113 - Zinc finger protein JAGGED-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047421.1 zinc finger protein JAGGED [Cucumis melo var. makuwa]

6.3e-89

90.36

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLNRARQLVFSNDNLAAQ PPPPHLGCCHSMAPANYHT   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RPS
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGH AA FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

KGN51212.2 hypothetical protein Csa_008797 [Cucumis sativus]

1.4e-88

89.85

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLNRARQLVFSNDNLAAQ PPPPHLGCCHSMAPANYH+   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RPS
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGA-AFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGH A  FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGA-AFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

TYK04130.1 zinc finger protein JAGGED [Cucumis melo var. makuwa]

3.7e-89

89.9

Show/hide

Query:  MERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRP
        +ERETETLNRARQLVFSNDNLAAQ PPPPHLGCCHSMAPANYHT   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RP
Subjt:  MERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRP

Query:  SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGH AA FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

XP_008465782.1 PREDICTED: zinc finger protein JAGGED [Cucumis melo]

5.1e-91

90.86

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHT   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RPS
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGH AA FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

XP_038876123.1 zinc finger protein JAGGED-like [Benincasa hispida]

2.1e-97

94.9

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHT  GGGG GVG+DSTLPLRFPTRMFSGSSPS+LLPQPPPPPLPPSHQPYLYSSPSRPS
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAAFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVE +SY C+GAPVGHGAAFGGRDGGGSGGRDGS QQQQQQQQRLDVPSSINRFQDGF
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAAFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTC2 C2H2-type domain-containing protein

6.7e-89

89.85

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLNRARQLVFSNDNLAAQ PPPPHLGCCHSMAPANYH+   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RPS
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGA-AFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGH A  FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGA-AFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

A0A1S3CQ11 zinc finger protein JAGGED

2.5e-91

90.86

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHT   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RPS
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGH AA FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

A0A5A7U1F5 Zinc finger protein JAGGED

3.0e-89

90.36

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLNRARQLVFSNDNLAAQ PPPPHLGCCHSMAPANYHT   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RPS
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGH AA FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

A0A5D3BYD4 Zinc finger protein JAGGED

1.8e-89

89.9

Show/hide

Query:  MERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRP
        +ERETETLNRARQLVFSNDNLAAQ PPPPHLGCCHSMAPANYHT   GG G VG+DSTLPLRFPTRMFSGSSP TLLPQPPPPPLP SHQPYLY+SP+RP
Subjt:  MERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRP

Query:  SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSS VESSSYTCIGAPVGH AA FGGRDGGGSGGRDGS     QQQQRLDVPSSINRFQDGF
Subjt:  SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAA-FGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

A0A6J1I6U1 zinc finger protein JAGGED-like

1.5e-75

80.9

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLL-PQPPPPPLPPSHQPYLYSSPSRP
        ERETETLNRARQLVFSNDNLA Q  PPPHLGCCHSMAP +YHT    G GGVG+D TL LRFPTRMF GSSP+TLL P P PPP PP HQPYLYSSPSRP
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLL-PQPPPPPLPPSHQPYLYSSPSRP

Query:  SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYG--SSSVESSSYTCIGAPVGHGAAFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF
        SSFPSYYPPPQASINDYYVGHVLGNP+QCSHQT+NYG  SSS+ESSSYTCIGAPVG  A FGGR+ G  GGRDGS      QQQRLDVPSSINRFQDGF
Subjt:  SSFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVNYG--SSSVESSSYTCIGAPVGHGAAFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

SwissProt top hits

e value

%identity

Alignment

Q6S591 Zinc finger protein JAGGED

3.9e-09

34.93

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLN+ARQLV+ ND +   PP     G  H+  P  Y +             + P+ +P     GSS + L+PQPP PP PP   PY YSS     
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVG-------HVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVG------HGAAFGGRDGGGSGGRDGSQQQQQQQQQRLD--V
           + Y  P    NDYY+         +  +P+  +  TV+Y + S     YTC+GAP+G       G +          GRDG        +QRLD  +
Subjt:  SFPSYYPPPQASINDYYVG-------HVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVG------HGAAFGGRDGGGSGGRDGSQQQQQQQQQRLD--V

Query:  PSSINRFQD
           INRFQD
Subjt:  PSSINRFQD

Q9LG97 Zinc finger protein STAMENLESS 1

2.3e-09

36.11

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPP----PPHLGCCHSMAPANYHTPGGGG--GGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYS
        ERETETLNRARQLVF ND+LAA          ++G   + AP      GGGG  GGGVG D  +PLR             + P+  PP  PP H  YLY+
Subjt:  ERETETLNRARQLVFSNDNLAAQPPP----PPHLGCCHSMAPANYHTPGGGG--GGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYS

Query:  SPSRPS-----SFPSYYPPP-----QASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAAFGGRDGG
        + + PS     S+P+ YP P      A++ DY +GH +      +   +         +S++C GAP+    A    D G
Subjt:  SPSRPS-----SFPSYYPPP-----QASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAAFGGRDGG

Arabidopsis top hits

e value

%identity

Alignment

AT1G13400.1 C2H2 and C2HC zinc fingers superfamily protein

8.6e-04

32.7

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETE+LN+AR+LV  ND+       PPH G      P ++    G    G  T    P+ +P R FS    S++L   PP   PP   P+         
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVN---YGSSSVESSSYTCIGAPVGHGA
                PQ + N       +GN +   HQT+     G  ++  SSYT IGAPV +G+
Subjt:  SFPSYYPPPQASINDYYVGHVLGNPSQCSHQTVN---YGSSSVESSSYTCIGAPVGHGA

AT1G68480.1 C2H2 and C2HC zinc fingers superfamily protein

2.8e-10

34.93

Show/hide

Query:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS
        ERETETLN+ARQLV+ ND +   PP     G  H+  P  Y +             + P+ +P     GSS + L+PQPP PP PP   PY YSS     
Subjt:  ERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPS

Query:  SFPSYYPPPQASINDYYVG-------HVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVG------HGAAFGGRDGGGSGGRDGSQQQQQQQQQRLD--V
           + Y  P    NDYY+         +  +P+  +  TV+Y + S     YTC+GAP+G       G +          GRDG        +QRLD  +
Subjt:  SFPSYYPPPQASINDYYVG-------HVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVG------HGAAFGGRDGGGSGGRDGSQQQQQQQQQRLD--V

Query:  PSSINRFQD
           INRFQD
Subjt:  PSSINRFQD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGAGAGAGACAGAGACACTGAATCGAGCTCGTCAGCTTGTTTTCAGTAACGATAACCTCGCCGCCCAACCACCTCCTCCTCCTCATTTAGGGTGCTGCCATTCAAT
GGCACCGGCAAACTACCACACTCCCGGTGGCGGAGGCGGGGGCGGCGTAGGAACTGATTCAACCCTGCCTCTTAGATTCCCAACGAGAATGTTCTCCGGGTCCTCCCCAA
GCACACTTTTGCCGCAGCCGCCGCCACCACCGCTACCTCCGTCGCACCAGCCATATCTATACAGCTCGCCGTCGCGGCCTTCGAGTTTCCCTTCCTATTATCCTCCTCCA
CAAGCCTCCATCAACGACTACTACGTGGGGCATGTGTTGGGGAACCCTTCACAATGCAGTCATCAGACAGTGAACTACGGTTCCAGCTCGGTGGAGTCAAGTAGCTACAC
TTGCATCGGAGCTCCGGTAGGGCATGGGGCGGCGTTCGGTGGACGAGATGGCGGTGGCAGTGGCGGTAGAGACGGATCACAGCAGCAACAGCAGCAGCAGCAGCAGCGTT
TGGACGTTCCTTCTTCGATCAATCGGTTTCAAGATGGATTCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTPGGGGGGGVGTDSTLPLRFPTRMFSGSSPSTLLPQPPPPPLPPSHQPYLYSSPSRPSSFPSYYPPP
QASINDYYVGHVLGNPSQCSHQTVNYGSSSVESSSYTCIGAPVGHGAAFGGRDGGGSGGRDGSQQQQQQQQQRLDVPSSINRFQDGF

Lsi09G010340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome