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Lsi09G010350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G010350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionReverse transcriptase
Genome locationchr09:15176220..15176711
RNA-Seq ExpressionLsi09G010350
SyntenyLsi09G010350
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033223.1 reverse transcriptase [Cucumis melo var. makuwa]6.5e-4457.06Show/hide
Query:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE
        GKV+AMTQQEA + PDV+TGT+L+C+ LA VLFDPGATHSFVS +F     + LE L E L I TP+G   + + V R C I ++G  L  +L+PL+++ 
Subjt:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE

Query:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
         DVILGMDFL  ++AS+DCHRKE+VFR+ G A+V FRG R ++   +ISV+KA KLLRKGCTA
Subjt:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

KAA0037607.1 uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]1.4e-4356.44Show/hide
Query:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE
        GKV+AMTQQEA + PDV+TGT+L+C+  A VLFDPGATHSFVS +F     + LE L E L I TP+G   + + V R C + ++G  L  +L+PL+++ 
Subjt:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE

Query:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
         DVILGMDFL  ++AS+DCHRKEVVFR+ G A+V FRG R+++   +ISV+KA KLLRKGCTA
Subjt:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

KAA0060259.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]9.0e-4659.87Show/hide
Query:  MTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFAKG----LECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKEFDVIL
        MTQQ+  + P+VVTGTL V DK AH+L DPGATHSFVS MF  G    LE L EEL I+TP+G +++ + V+R C + IDG  L  +LIPL+I EFDVIL
Subjt:  MTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFAKG----LECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKEFDVIL

Query:  GMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCT
        GM+F+S ++ASL+CH+KE+VF++SGK ++ F GDR+IL TC+IS +K SKLLRKGCT
Subjt:  GMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCT

TYK09349.1 RVP_2 domain-containing protein [Cucumis melo var. makuwa]1.4e-4356.44Show/hide
Query:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE
        GKV+AMTQQEA + PDV+TGT+L+C+  A VLFDPGATHSFVS +F     + LE L E L I TP+G   + + V R C + ++G  L  +L+PL+++ 
Subjt:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE

Query:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
         DVILGMDFL  ++AS+DCHRKEVVFR+ G A+V FRG R+++   +ISV+KA KLLRKGCTA
Subjt:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

WP_217833159.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]2.6e-4561.54Show/hide
Query:  QQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKEFDVILGM
        QQEA++ P+VVTGTL +C+  AHVL DPGATHSF++ MFA      LE LPEEL + TP+G   V+S V++ C I +DG  ++ANLIPLDI+EFDVILGM
Subjt:  QQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKEFDVILGM

Query:  DFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
        DFLS+Y A++DC +KEVVF+     +V FRGDR+ILPTC+IS VKA KLL KGC A
Subjt:  DFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

TrEMBL top hitse value%identityAlignment
A0A5A7SS19 Reverse transcriptase3.1e-4457.06Show/hide
Query:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE
        GKV+AMTQQEA + PDV+TGT+L+C+ LA VLFDPGATHSFVS +F     + LE L E L I TP+G   + + V R C I ++G  L  +L+PL+++ 
Subjt:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE

Query:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
         DVILGMDFL  ++AS+DCHRKE+VFR+ G A+V FRG R ++   +ISV+KA KLLRKGCTA
Subjt:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

A0A5A7T7T0 Retrotrans_gag domain-containing protein7.0e-4456.44Show/hide
Query:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE
        GKV+AMTQQEA + PDV+TGT+L+C+  A VLFDPGATHSFVS +F     + LE L E L I TP+G   + + V R C + ++G  L  +L+PL+++ 
Subjt:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE

Query:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
         DVILGMDFL  ++AS+DCHRKEVVFR+ G A+V FRG R+++   +ISV+KA KLLRKGCTA
Subjt:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

A0A5A7TZX2 Retrotransposon protein2.0e-4355.83Show/hide
Query:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE
        GKV+AMTQQEA + PDV+TGT+L+C+  A VLFDPGATHSFV+ +F     + LE L E L I TP+G   + + V R C + ++G  L  +L+PL ++ 
Subjt:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE

Query:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
         DVILGMDFL  ++AS+DCH+KEVVFR+SG A+V FRG R+++   +ISV+KA KLLRKGCTA
Subjt:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

A0A5D3B7T7 RNA-directed DNA polymerase-like protein4.4e-4659.87Show/hide
Query:  MTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFAKG----LECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKEFDVIL
        MTQQ+  + P+VVTGTL V DK AH+L DPGATHSFVS MF  G    LE L EEL I+TP+G +++ + V+R C + IDG  L  +LIPL+I EFDVIL
Subjt:  MTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFAKG----LECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKEFDVIL

Query:  GMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCT
        GM+F+S ++ASL+CH+KE+VF++SGK ++ F GDR+IL TC+IS +K SKLLRKGCT
Subjt:  GMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCT

A0A5D3CGB6 RVP_2 domain-containing protein7.0e-4456.44Show/hide
Query:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE
        GKV+AMTQQEA + PDV+TGT+L+C+  A VLFDPGATHSFVS +F     + LE L E L I TP+G   + + V R C + ++G  L  +L+PL+++ 
Subjt:  GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFA----KGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKE

Query:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA
         DVILGMDFL  ++AS+DCHRKEVVFR+ G A+V FRG R+++   +ISV+KA KLLRKGCTA
Subjt:  FDVILGMDFLSEYHASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGAAGGTGTTTGCTATGACCCAACAGGAAGCCAACAATAACCCTGATGTTGTTACTGGTACGTTACTTGTTTGTGATAAACTTGCACATGTATTGTTTGATCCTGGTGC
CACACACTCTTTTGTGTCTTGTATGTTTGCTAAGGGTTTAGAATGCTTGCCAGAAGAGTTACTTATTAGTACGCCATTGGGTGGAACTTATGTGTCCAGTGGTGTATTTA
GGGGCTGCACGATATGTATTGATGGAAGTGAGTTGTCTGCTAATTTAATTCCTTTAGATATTAAGGAGTTTGATGTGATACTAGGGATGGATTTTCTATCAGAGTATCAT
GCTTCTTTAGATTGTCATCGAAAGGAAGTAGTGTTTAGACAATCGGGAAAGGCTAAAGTGAATTTTAGAGGCGATAGACGAATCCTTCCTACGTGTATAATTTCTGTTGT
GAAGGCGAGTAAGTTATTGAGAAAGGGTTGCACAGCTTAA
mRNA sequenceShow/hide mRNA sequence
GGGAAGGTGTTTGCTATGACCCAACAGGAAGCCAACAATAACCCTGATGTTGTTACTGGTACGTTACTTGTTTGTGATAAACTTGCACATGTATTGTTTGATCCTGGTGC
CACACACTCTTTTGTGTCTTGTATGTTTGCTAAGGGTTTAGAATGCTTGCCAGAAGAGTTACTTATTAGTACGCCATTGGGTGGAACTTATGTGTCCAGTGGTGTATTTA
GGGGCTGCACGATATGTATTGATGGAAGTGAGTTGTCTGCTAATTTAATTCCTTTAGATATTAAGGAGTTTGATGTGATACTAGGGATGGATTTTCTATCAGAGTATCAT
GCTTCTTTAGATTGTCATCGAAAGGAAGTAGTGTTTAGACAATCGGGAAAGGCTAAAGTGAATTTTAGAGGCGATAGACGAATCCTTCCTACGTGTATAATTTCTGTTGT
GAAGGCGAGTAAGTTATTGAGAAAGGGTTGCACAGCTTAA
Protein sequenceShow/hide protein sequence
GKVFAMTQQEANNNPDVVTGTLLVCDKLAHVLFDPGATHSFVSCMFAKGLECLPEELLISTPLGGTYVSSGVFRGCTICIDGSELSANLIPLDIKEFDVILGMDFLSEYH
ASLDCHRKEVVFRQSGKAKVNFRGDRRILPTCIISVVKASKLLRKGCTA