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Lsi09G010360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G010360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranslocase subunit seca
Genome locationchr09:15402370..15403907
RNA-Seq ExpressionLsi09G010360
SyntenyLsi09G010360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047427.1 uncharacterized protein E6C27_scaffold498G00180 [Cucumis melo var. makuwa]2.5e-7290.6Show/hide
Query:  AAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQKLLPLFSPAA
        +AA DRRER+VCPKPRRLGL+NDT NDNPFRHRFDSDA+DLLF KGGCGLE FNSS+TQLASS PYFCGSPPSRVANPLIQDARFGDEK KLLPLFS AA
Subjt:  AAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQKLLPLFSPAA

Query:  SPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        SPP SPP SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  SPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_004140334.1 uncharacterized protein LOC101221533 [Cucumis sativus]4.0e-7890.62Show/hide
Query:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK
        MNWVCEEM +  AA DRRER+VCPKPRRLGL+NDT NDNPFRHRFDSDALDLLF KGGCGLENFNSS+ QLASSPPYFCGSPPSRVANPLIQDARFGDEK
Subjt:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK

Query:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         KLLPLFSPAASPP SPP SAGRKGGCVRVNFG NPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_008465783.1 PREDICTED: uncharacterized protein LOC103503385 [Cucumis melo]7.6e-7790Show/hide
Query:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK
        MNWVCEEM S  AA DRRER+VCPKPRRLGL+NDT NDNPFRHRFDSDA+DLLF KGGCGLE FNSS+TQLASS PYFCGSPPSRVANPLIQDARFGDEK
Subjt:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK

Query:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         KLLPLFS AASPP SPP SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_022923501.1 uncharacterized protein LOC111431174 [Cucurbita moschata]1.3e-6380.5Show/hide
Query:  EMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDS----DALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQK
        E M+ AA  DRRER+VCPKPRRLGL+N T NDNPFRHRFDS    DALDLLFFKGGC LENFNSSSTQLASSPPY CG+PPSRVANPLIQDARFG+EK K
Subjt:  EMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDS----DALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQK

Query:  LLPLFSP-AASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        +LP+FSP  A PP SPP S  R GG VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Subjt:  LLPLFSP-AASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_038906747.1 uncharacterized protein LOC120092671 [Benincasa hispida]3.5e-8293.75Show/hide
Query:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK
        MNWVCEEMM+   AADRRER+VCPKPRRLGLMND GNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK
Subjt:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK

Query:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         KLLPLFSPAASPPSSPP SAGRKGGCVR+NFGNNPAVRIEGFDCRLDRERRNRS+PALA
Subjt:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

TrEMBL top hitse value%identityAlignment
A0A0A0KRF1 Uncharacterized protein2.0e-7890.62Show/hide
Query:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK
        MNWVCEEM +  AA DRRER+VCPKPRRLGL+NDT NDNPFRHRFDSDALDLLF KGGCGLENFNSS+ QLASSPPYFCGSPPSRVANPLIQDARFGDEK
Subjt:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK

Query:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         KLLPLFSPAASPP SPP SAGRKGGCVRVNFG NPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A1S3CR46 uncharacterized protein LOC1035033853.7e-7790Show/hide
Query:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK
        MNWVCEEM S  AA DRRER+VCPKPRRLGL+NDT NDNPFRHRFDSDA+DLLF KGGCGLE FNSS+TQLASS PYFCGSPPSRVANPLIQDARFGDEK
Subjt:  MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEK

Query:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         KLLPLFS AASPP SPP SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A5D3C147 Uncharacterized protein1.2e-7290.6Show/hide
Query:  AAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQKLLPLFSPAA
        +AA DRRER+VCPKPRRLGL+NDT NDNPFRHRFDSDA+DLLF KGGCGLE FNSS+TQLASS PYFCGSPPSRVANPLIQDARFGDEK KLLPLFS AA
Subjt:  AAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQKLLPLFSPAA

Query:  SPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        SPP SPP SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  SPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A6J1E6Z2 uncharacterized protein LOC1114311746.1e-6480.5Show/hide
Query:  EMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDS----DALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQK
        E M+ AA  DRRER+VCPKPRRLGL+N T NDNPFRHRFDS    DALDLLFFKGGC LENFNSSSTQLASSPPY CG+PPSRVANPLIQDARFG+EK K
Subjt:  EMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDS----DALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQK

Query:  LLPLFSP-AASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        +LP+FSP  A PP SPP S  R GG VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Subjt:  LLPLFSP-AASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A6J1I2X1 uncharacterized protein LOC1114704602.3e-6380.25Show/hide
Query:  VCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDS----DALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDE
        V EEMM  AA  DRRER+VCPKPRRLGL+N T NDNPFRHRFDS    DALDLLFFKGGC LENF SSSTQLASSPPY CG+PPSRVANPLIQDARFG+E
Subjt:  VCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDS----DALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDE

Query:  KQKLLPLFSP-AASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        K K+LP+FSP  A PP SPP S  R GG VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Subjt:  KQKLLPLFSP-AASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13390.1 unknown protein3.2e-2542.11Show/hide
Query:  EEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDN---PFRHRFD-------SDALDLLFFKGGCGLENFNSSSTQLASSPP-YFCGSPPSRVANPLIQDA
        EEM   AA +DRR+ V+CPKPRR+G +N   + +      H+ +       S+ LD +  KGG G        T+   +PP +F GSPPSRV+NPL +D+
Subjt:  EEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDN---PFRHRFD-------SDALDLLFFKGGCGLENFNSSSTQLASSPP-YFCGSPPSRVANPLIQDA

Query:  RFGDEKQKLLPLFSPAASPPSS---PPSSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         F   +++LL + SP+ S P +    P S+ R G CV    +FGNNP VR+ GFDC  DR   NRSI  LA
Subjt:  RFGDEKQKLLPLFSPAASPPSS---PPSSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

AT1G13390.2 unknown protein3.2e-2542.11Show/hide
Query:  EEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDN---PFRHRFD-------SDALDLLFFKGGCGLENFNSSSTQLASSPP-YFCGSPPSRVANPLIQDA
        EEM   AA +DRR+ V+CPKPRR+G +N   + +      H+ +       S+ LD +  KGG G        T+   +PP +F GSPPSRV+NPL +D+
Subjt:  EEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDN---PFRHRFD-------SDALDLLFFKGGCGLENFNSSSTQLASSPP-YFCGSPPSRVANPLIQDA

Query:  RFGDEKQKLLPLFSPAASPPSS---PPSSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         F   +++LL + SP+ S P +    P S+ R G CV    +FGNNP VR+ GFDC  DR   NRSI  LA
Subjt:  RFGDEKQKLLPLFSPAASPPSS---PPSSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

AT1G68490.1 unknown protein1.2e-3248.84Show/hide
Query:  EMMSAAAAADRRER--VVCPKPRRLGLMNDTGNDNP-----FRHRF-------DSDALDLLFFKGGCGLENFNSSSTQLASSP-PYFCGSPPSRVANPLI
        ++ S++ +   R++  VVCPKPRR+GL N+  + +      F H+        ++D LD++  K G G E  N    Q+  SP P+ CGSPPSRVANPL 
Subjt:  EMMSAAAAADRRER--VVCPKPRRLGLMNDTGNDNP-----FRHRF-------DSDALDLLFFKGGCGLENFNSSSTQLASSP-PYFCGSPPSRVANPLI

Query:  QDARFGDEKQKLLPLFSP--AASPPSSPPSSAGRKGGC-VRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        QDARF DE   +  +  P     P SSP SS+GRKGGC VR NFGN+P VR+EGFDC LDR+ RN SIPALA
Subjt:  QDARFGDEKQKLLPLFSP--AASPPSSPPSSAGRKGGC-VRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

AT3G02555.1 unknown protein4.7e-2450.34Show/hide
Query:  ERVVCPKPRRLGLMNDTGNDNPFRHRFD-SDALDLLFFKGGCG-LENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQKLLPLFSPAASPPSS
        + VVCPKPRR   +       PFR  F  S A D+   K G   L+ F    +  + SPP+F GSPPSR ANPL QDARFGDEK   L   SP+ SP   
Subjt:  ERVVCPKPRRLGLMNDTGNDNPFRHRFD-SDALDLLFFKGGCG-LENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQKLLPLFSPAASPPSS

Query:  PPSSAGRKGGCVRVNFGNNPA-VRIEGFDCRLDRERRNRSIPALA
         PS++  K GC R+ FG  PA VR+EGFDC L+R+R N SIPA+A
Subjt:  PPSSAGRKGGCVRVNFGNNPA-VRIEGFDCRLDRERRNRSIPALA

AT5G16110.1 unknown protein3.7e-2947.65Show/hide
Query:  EEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGL-------ENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGD
        EEMM      DR++ VVCPKPRR+GL+ +     P R      A DL   K G  L       E+  +    L+SSPPYF GSPPSR ANPL QDARF D
Subjt:  EEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGL-------ENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGD

Query:  EK-------QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFG-NNPAVRIEGFDCRLDRERRNRSIPALA
        EK          L  +S    P  S  SS+    GCVR+ FG N+PAVR+EGFDC L+R+R+N SIPA+A
Subjt:  EK-------QKLLPLFSPAASPPSSPPSSAGRKGGCVRVNFG-NNPAVRIEGFDCRLDRERRNRSIPALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGGGTTTGTGAAGAGATGATGAGCGCCGCCGCCGCCGCCGACCGCCGTGAGCGAGTGGTTTGTCCAAAACCTCGCCGTCTCGGTCTCATGAATGATACCGGCAA
CGACAACCCATTTAGACACCGTTTTGATTCAGATGCTCTGGATCTCCTATTCTTTAAGGGTGGTTGTGGATTGGAGAATTTTAACAGTAGTAGTACACAATTAGCCTCGT
CGCCGCCGTATTTTTGTGGGTCGCCGCCGAGTAGAGTAGCTAACCCATTAATCCAAGACGCTCGATTTGGGGACGAGAAGCAGAAGCTGCTCCCCCTCTTCTCGCCGGCG
GCTTCTCCTCCGTCGTCTCCACCGTCGTCGGCCGGTCGGAAAGGCGGATGTGTTCGGGTAAATTTTGGTAACAACCCGGCGGTGAGGATCGAGGGGTTTGATTGCCGCCT
CGACAGGGAGAGGCGAAACCGCAGCATCCCTGCTCTGGCTTAG
mRNA sequenceShow/hide mRNA sequence
AAAGGGATGAATATTGAATAGAGAGGAAATCTCCCCGTCTCTCTCTCTATATCTCTCTAGCTGTGCTTTGCTGTTGCCCAATAGATATTACCCTTTTTTTTTCTCTTCTC
TCTCTCTCTCTCTCTCTCTCTCTTCCCTTTTGTTTTCATTTTATTTTCCAATTAACAAATCCGATTCCCCTGTCTCTTTGCCCCTTCTCTTATGTTCTTGTTATAACTTA
TAATTCACGCTCCTCCCCTCTCCTTTTTTCTCCCAACCACAATCCTCTCTCTTCTTCTTCAGGCAAACAGAGAAAACTAAAATTAGAAGAAGATGAATTGGGTTTGTGAA
GAGATGATGAGCGCCGCCGCCGCCGCCGACCGCCGTGAGCGAGTGGTTTGTCCAAAACCTCGCCGTCTCGGTCTCATGAATGATACCGGCAACGACAACCCATTTAGACA
CCGTTTTGATTCAGATGCTCTGGATCTCCTATTCTTTAAGGGTGGTTGTGGATTGGAGAATTTTAACAGTAGTAGTACACAATTAGCCTCGTCGCCGCCGTATTTTTGTG
GGTCGCCGCCGAGTAGAGTAGCTAACCCATTAATCCAAGACGCTCGATTTGGGGACGAGAAGCAGAAGCTGCTCCCCCTCTTCTCGCCGGCGGCTTCTCCTCCGTCGTCT
CCACCGTCGTCGGCCGGTCGGAAAGGCGGATGTGTTCGGGTAAATTTTGGTAACAACCCGGCGGTGAGGATCGAGGGGTTTGATTGCCGCCTCGACAGGGAGAGGCGAAA
CCGCAGCATCCCTGCTCTGGCTTAGAAACCCGATCCAAGCCGAGCCGAGCCGATTGAGCAATGATGATGATGAAGAAAACAAACACATGGATTTTAATTTTTTTCCCCCA
CAAATTCAAATTAAATATTTAAAGTGAAATTTTGAAAAAAAAAAAAAAAACCTTTTTGACCAAAACACCATTATTGTAAATAATGTGAAAAAGAAATCCAAGTAAATATT
ATTTTAAAAGAAAAAAAAGGGGCCTTGTTAGGTTTCTTTCTCTATTTAGTTGAGTTGAGGGTTGAGAGTCCTTGTTTGACCAATTGAAGAATAAAAGGCAGAGGAAGAGA
GAGATATTCATAGGTTTTTGAGAATTGAGAGAATTAATATACCCTCTCTCTTTCTCTTCTCTATTTTGTAATATATC
Protein sequenceShow/hide protein sequence
MNWVCEEMMSAAAAADRRERVVCPKPRRLGLMNDTGNDNPFRHRFDSDALDLLFFKGGCGLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKQKLLPLFSPA
ASPPSSPPSSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA