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Lsi09G010450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G010450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpentatricopeptide repeat-containing protein At4g08210
Genome locationchr09:15704656..15707386
RNA-Seq ExpressionLsi09G010450
SyntenyLsi09G010450
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032773.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-0975.47Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAKELRH A VRAFRRGN +HAYLRKF   NDVF+ANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
XP_016903440.1 PREDICTED: pentatricopeptide repeat-containing protein At4g08210 isoform X1 [Cucumis melo]9.9e-1179.25Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAKELRH ATVRAF+RGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
XP_023527633.1 pentatricopeptide repeat-containing protein At4g08210 [Cucurbita pepo subsp. pepo]1.9e-0975.47Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAKELRH A VRAFRRGN +HAYLRKF   NDVF+ANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
XP_031741317.1 pentatricopeptide repeat-containing protein At4g08210 isoform X1 [Cucumis sativus]1.7e-1077.36Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAK+LRH ATVRAF+RGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
XP_038874392.1 pentatricopeptide repeat-containing protein At4g08210 [Benincasa hispida]1.7e-1079.25Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAKELRH A VRAFRRGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
TrEMBL top hitse value%identityAlignment
A0A0A0KRG3 Uncharacterized protein8.2e-1177.36Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAK+LRH ATVRAF+RGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
A0A1S4E639 pentatricopeptide repeat-containing protein At4g08210 isoform X14.8e-1179.25Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAKELRH ATVRAF+RGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
A0A5A7TZR3 Pentatricopeptide repeat-containing protein4.8e-1179.25Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAKELRH ATVRAF+RGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
A0A6J1CK13 pentatricopeptide repeat-containing protein At4g082103.4e-0971.7Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRK---FNDVFLANNLISMYAEFLCTRCTE
        IAKELRH A V+AF++GN IHAYLRK    NDVFLANNL+SMYAEFL  R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRK---FNDVFLANNLISMYAEFLCTRCTE
A0A6J1HN25 pentatricopeptide repeat-containing protein At4g082109.0e-1075.47Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
        IAKELRH A VRAFRRGN +HAYLRKF   NDVF+ANNLISMYAEF   R  E
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G08210.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.3e-0450Show/hide
Query:  IAKELRHYATVRAFRRGNVIHAYLRK---FNDVFLANNLISMYAEF
        IA  LRH   V+AF+RG  I A++ K     +VF+ANN+ISMY +F
Subjt:  IAKELRHYATVRAFRRGNVIHAYLRK---FNDVFLANNLISMYAEF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCATAGCTAAGGAATTGCGCCACTACGCAACAGTTAGAGCTTTCAGACGAGGCAATGTCATTCATGCTTATTTGAGAAAATTTAACGATGTGTTTCTTGCCAACAATTT
GATTTCCATGTATGCGGAGTTTTTATGTACGAGATGCACAGAAGACCTAATGAGGCATTCTGAGTGTATAATGATATGCCGAAATCAGAGATACCGAATGGGTAGATGTC
CAAGTGACGAACTGCAATTTCCTGTCAAGTCTTTGATGGCTTCCTCCTATACGGATAATTCTGTTGGGTGTAGATTGATGGTAACATCATTATGGTCCTTGACCCTTGAA
ATCCTGTTTCAAATGCTCAAAATTTTAGTTGGTTGCCGTTACTTCTTTGTAAATGCTTTAACAATTAAAATCGTTCGACAAGCTTCTTTTAGTTGTCAACTGTTGAGTAA
TTTATCCAATAGTCCACCAATGGAATTCGGGGTACAACGCAGTCTCTTGTCTAAGTCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ACCATAGCTAAGGAATTGCGCCACTACGCAACAGTTAGAGCTTTCAGACGAGGCAATGTCATTCATGCTTATTTGAGAAAATTTAACGATGTGTTTCTTGCCAACAATTT
GATTTCCATGTATGCGGAGTTTTTATGTACGAGATGCACAGAAGACCTAATGAGGCATTCTGAGTGTATAATGATATGCCGAAATCAGAGATACCGAATGGGTAGATGTC
CAAGTGACGAACTGCAATTTCCTGTCAAGTCTTTGATGGCTTCCTCCTATACGGATAATTCTGTTGGGTGTAGATTGATGGTAACATCATTATGGTCCTTGACCCTTGAA
ATCCTGTTTCAAATGCTCAAAATTTTAGTTGGTTGCCGTTACTTCTTTGTAAATGCTTTAACAATTAAAATCGTTCGACAAGCTTCTTTTAGTTGTCAACTGTTGAGTAA
TTTATCCAATAGTCCACCAATGGAATTCGGGGTACAACGCAGTCTCTTGTCTAAGTCAAATTAG
Protein sequenceShow/hide protein sequence
TIAKELRHYATVRAFRRGNVIHAYLRKFNDVFLANNLISMYAEFLCTRCTEDLMRHSECIMICRNQRYRMGRCPSDELQFPVKSLMASSYTDNSVGCRLMVTSLWSLTLE
ILFQMLKILVGCRYFFVNALTIKIVRQASFSCQLLSNLSNSPPMEFGVQRSLLSKSN