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Lsi09G010880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G010880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTesmin/TSO1-like CXC domain-containing protein
Genome locationchr09:17274222..17275549
RNA-Seq ExpressionLsi09G010880
SyntenyLsi09G010880
Gene Ontology termsGO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR005172 - CRC domain
IPR033467 - Tesmin/TSO1-like CXC domain
IPR044522 - CRC domain-containing protein TSO1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52869.1 hypothetical protein Csa_014688 [Cucumis sativus]9.0e-2040.76Show/hide
Query:  SNNREAAIGDDECKISHFHETK-NFCDELSVE-------------------------------QSVSSDVSINEMINSENN--------KKSKVENGNKV
        ++NREA IGDD   +S+FHE+   F D  ++E                               + VS  VS NE+ N  N+        KKS+VEN N  
Subjt:  SNNREAAIGDDECKISHFHETK-NFCDELSVE-------------------------------QSVSSDVSINEMINSENN--------KKSKVENGNKV

Query:  SP-CCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGC
        SP  CNCKK++CLKLYCECFASG +C ++     +C N P Y DT  A KQ++ +K  S F  + V+E G T   TSSTERRGC
Subjt:  SP-CCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGC

OMO80693.1 hypothetical protein COLO4_23979 [Corchorus olitorius]3.9e-1535.37Show/hide
Query:  ILSNNREAAIGDDECKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYC
        +L    +  +    CK++    ++  C   S+++ +         S     NEM+N E+ KK + ++ N      C  CNCKK +CLKLYC+CFA+G+YC
Subjt:  ILSNNREAAIGDDECKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYC

Query:  RKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK------EVQEDGRTKKTTSSTERRGC
          D C    C N P YEDT    +Q+I S+NP  F+ K      E QEDG  K  +S+  +RGC
Subjt:  RKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK------EVQEDGRTKKTTSSTERRGC

OMO89502.1 hypothetical protein CCACVL1_07791, partial [Corchorus capsularis]3.3e-1437.01Show/hide
Query:  CKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIP
        CK++    +++ C   S+++ +         S     NEM+N E+ KK + ++ N      C  CNCKK++CLKLYC+CFA+G+YC  D C    C N P
Subjt:  CKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIP

Query:  LYEDTFEAVKQEILSKNPSVFSSKEVQ----------EDGRTKKTTSSTERRGC
         YEDT    +Q+I S+NP  F+ K VQ          EDG  K  +S+  +RGC
Subjt:  LYEDTFEAVKQEILSKNPSVFSSKEVQ----------EDGRTKKTTSSTERRGC

XP_008454271.1 PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo]8.4e-1838.69Show/hide
Query:  SNNREAAIGDDECKISHFHETKNFCDELSVEQS----------------------VSSDVSINEM--------INSENNKKSKVENGNKVSPCCNC--KK
        + N+EA IGD+  KIS+FH+T+N C  LSVE++                       S   S+N+M             + K+KVE+G K SPCC+C  K 
Subjt:  SNNREAAIGDDECKISHFHETKNFCDELSVEQS----------------------VSSDVSINEM--------INSENNKKSKVENGNKVSPCCNC--KK

Query:  NECLKLYCECFASGMYCRKDV-CGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTT
         ECL L CECFA  M+C ++  C   DC N PLYEDT +  K++I S NPS F    V+      K+T
Subjt:  NECLKLYCECFASGMYCRKDV-CGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTT

XP_038878069.1 protein tesmin/TSO1-like CXC 2 [Benincasa hispida]2.0e-2746.88Show/hide
Query:  SNNREAAIGDDECKISHFHETKNFCDELSVEQS---------------------------------VSSDVSINEMINSENNK----KSKVENGNK--VS
        SN+REAAIG D   +S+FHET+N C EL VE++                                 +SSDVS + + N  ++K    KSKVE  NK    
Subjt:  SNNREAAIGDDECKISHFHETKNFCDELSVEQS---------------------------------VSSDVSINEMINSENNK----KSKVENGNK--VS

Query:  PCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGCKNNFIYRKKR
        P CNC K+ECL L CECF SGMYC +D CG TDC N  LYEDT E VKQ+ILS NPS F++K+V+E    K   SS+ERRGC  N I+ K R
Subjt:  PCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGCKNNFIYRKKR

TrEMBL top hitse value%identityAlignment
A0A0A0KVD1 CRC domain-containing protein4.3e-2040.76Show/hide
Query:  SNNREAAIGDDECKISHFHETK-NFCDELSVE-------------------------------QSVSSDVSINEMINSENN--------KKSKVENGNKV
        ++NREA IGDD   +S+FHE+   F D  ++E                               + VS  VS NE+ N  N+        KKS+VEN N  
Subjt:  SNNREAAIGDDECKISHFHETK-NFCDELSVE-------------------------------QSVSSDVSINEMINSENN--------KKSKVENGNKV

Query:  SP-CCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGC
        SP  CNCKK++CLKLYCECFASG +C ++     +C N P Y DT  A KQ++ +K  S F  + V+E G T   TSSTERRGC
Subjt:  SP-CCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGC

A0A1R3IDN5 CRC domain-containing protein1.9e-1535.37Show/hide
Query:  ILSNNREAAIGDDECKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYC
        +L    +  +    CK++    ++  C   S+++ +         S     NEM+N E+ KK + ++ N      C  CNCKK +CLKLYC+CFA+G+YC
Subjt:  ILSNNREAAIGDDECKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYC

Query:  RKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK------EVQEDGRTKKTTSSTERRGC
          D C    C N P YEDT    +Q+I S+NP  F+ K      E QEDG  K  +S+  +RGC
Subjt:  RKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK------EVQEDGRTKKTTSSTERRGC

A0A1R3J3U2 CRC domain-containing protein (Fragment)1.6e-1437.01Show/hide
Query:  CKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIP
        CK++    +++ C   S+++ +         S     NEM+N E+ KK + ++ N      C  CNCKK++CLKLYC+CFA+G+YC  D C    C N P
Subjt:  CKISHFHETKNFCDELSVEQSV---------SSDVSINEMINSENNKKSKVENGNKVSP--C--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIP

Query:  LYEDTFEAVKQEILSKNPSVFSSKEVQ----------EDGRTKKTTSSTERRGC
         YEDT    +Q+I S+NP  F+ K VQ          EDG  K  +S+  +RGC
Subjt:  LYEDTFEAVKQEILSKNPSVFSSKEVQ----------EDGRTKKTTSSTERRGC

A0A1S3BY78 protein tesmin/TSO1-like CXC 24.1e-1838.69Show/hide
Query:  SNNREAAIGDDECKISHFHETKNFCDELSVEQS----------------------VSSDVSINEM--------INSENNKKSKVENGNKVSPCCNC--KK
        + N+EA IGD+  KIS+FH+T+N C  LSVE++                       S   S+N+M             + K+KVE+G K SPCC+C  K 
Subjt:  SNNREAAIGDDECKISHFHETKNFCDELSVEQS----------------------VSSDVSINEM--------INSENNKKSKVENGNKVSPCCNC--KK

Query:  NECLKLYCECFASGMYCRKDV-CGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTT
         ECL L CECFA  M+C ++  C   DC N PLYEDT +  K++I S NPS F    V+      K+T
Subjt:  NECLKLYCECFASGMYCRKDV-CGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQEDGRTKKTT

A0A5N6PNL7 CRC domain-containing protein2.1e-1433.97Show/hide
Query:  AAIGDDECKISHFHETKNFCDELSVEQSVSSDVS----------INEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGST
        A++G  +  I++  +  +F +++   Q+V+ D S          +++   S   K+ + EN      C  CNCKK++CLKLYCECFA+G+YC  + C   
Subjt:  AAIGDDECKISHFHETKNFCDELSVEQSVSSDVS----------INEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGST

Query:  DCSNIPLYEDTFEAVKQEILSKNPSVF------SSKEVQEDGRTKKTTSSTERRGC
        DC N P++EDT  A +++I S+NP  F      +S+ +QED  +    S+  +RGC
Subjt:  DCSNIPLYEDTFEAVKQEILSKNPSVF------SSKEVQEDGRTKKTTSSTERRGC

SwissProt top hitse value%identityAlignment
A1Z9E2 Protein lin-54 homolog3.7e-0839.08Show/hide
Query:  CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEV---QEDGRTKKTTSSTERRGCKNNF
        CNC K++CLKLYC+CFA+G +C+   C   DC N   YE   E   +  L +NPS F  K       D R      + +R GC  N+
Subjt:  CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEV---QEDGRTKKTTSSTERRGCKNNF

F4JIF5 Protein tesmin/TSO1-like CXC 27.7e-1438.81Show/hide
Query:  ETKNFCDELSVEQSVSSDVSINEM-INSENNKKSKVENGNKVS-PCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP
        +T+N   E   +Q V  + ++ E+ ++S   K+ K+++G   S   CNCKK++CLKLYCECFA+G+YC  + C   DC N P++ED   A +++I S+NP
Subjt:  ETKNFCDELSVEQSVSSDVSINEM-INSENNKKSKVENGNKVS-PCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP

Query:  SVFSSK------EVQE--DGRTKKTTSSTERRGC
          F+ K       VQE  D  +K   S+  +RGC
Subjt:  SVFSSK------EVQE--DGRTKKTTSSTERRGC

F4JY84 Protein tesmin/TSO1-like CXC 77.4e-0943.42Show/hide
Query:  NNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK
        N  +SK    NK    CNCK ++CLKLYCECFASG YC  + C   +C N    E + +     IL +NP  F  K
Subjt:  NNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK

Q8L548 Protein tesmin/TSO1-like CXC 31.9e-1238.74Show/hide
Query:  INSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK---------EVQEDGRTK
        I+ +  ++   ++G   S C  CNCKK++CLKLYCECFA+G YC  + C   +C N P+++D   A +++I S+NP  F+ K         EV ED  +K
Subjt:  INSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK---------EVQEDGRTK

Query:  KTTSSTERRGC
           S+  +RGC
Subjt:  KTTSSTERRGC

Q9LUI3 CRC domain-containing protein TSO13.8e-1335.82Show/hide
Query:  ETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP
        ET +  +   VE+   + V     + S   K  K E   +   C  CNCKK++CLKLYCECFA+G+YC  + C   DC N P++E+T  A +++I S+NP
Subjt:  ETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP

Query:  SVFSSKEVQ--------EDGRTKKTTSSTERRGC
          F+ K ++         D  +K   S+  +RGC
Subjt:  SVFSSKEVQ--------EDGRTKKTTSSTERRGC

Arabidopsis top hitse value%identityAlignment
AT3G04850.1 Tesmin/TSO1-like CXC domain-containing protein2.6e-0930.89Show/hide
Query:  EQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQED
        E+SV  +   ++++  EN + S  +  +++  C  C C+K++CLKLYCECF++G++C  + C   +C N P++ED     ++ I ++NP  F+ K V   
Subjt:  EQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSKEVQED

Query:  G--------RTKKTTSSTERRGC
                  +K   S+  +RGC
Subjt:  G--------RTKKTTSSTERRGC

AT3G22760.1 Tesmin/TSO1-like CXC domain-containing protein1.3e-1338.74Show/hide
Query:  INSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK---------EVQEDGRTK
        I+ +  ++   ++G   S C  CNCKK++CLKLYCECFA+G YC  + C   +C N P+++D   A +++I S+NP  F+ K         EV ED  +K
Subjt:  INSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK---------EVQEDGRTK

Query:  KTTSSTERRGC
           S+  +RGC
Subjt:  KTTSSTERRGC

AT3G22780.1 Tesmin/TSO1-like CXC domain-containing protein2.7e-1435.82Show/hide
Query:  ETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP
        ET +  +   VE+   + V     + S   K  K E   +   C  CNCKK++CLKLYCECFA+G+YC  + C   DC N P++E+T  A +++I S+NP
Subjt:  ETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPC--CNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP

Query:  SVFSSKEVQ--------EDGRTKKTTSSTERRGC
          F+ K ++         D  +K   S+  +RGC
Subjt:  SVFSSKEVQ--------EDGRTKKTTSSTERRGC

AT4G14770.1 TESMIN/TSO1-like CXC 25.4e-1538.81Show/hide
Query:  ETKNFCDELSVEQSVSSDVSINEM-INSENNKKSKVENGNKVS-PCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP
        +T+N   E   +Q V  + ++ E+ ++S   K+ K+++G   S   CNCKK++CLKLYCECFA+G+YC  + C   DC N P++ED   A +++I S+NP
Subjt:  ETKNFCDELSVEQSVSSDVSINEM-INSENNKKSKVENGNKVS-PCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNP

Query:  SVFSSK------EVQE--DGRTKKTTSSTERRGC
          F+ K       VQE  D  +K   S+  +RGC
Subjt:  SVFSSK------EVQE--DGRTKKTTSSTERRGC

AT5G25790.1 Tesmin/TSO1-like CXC domain-containing protein5.3e-1043.42Show/hide
Query:  NNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK
        N  +SK    NK    CNCK ++CLKLYCECFASG YC  + C   +C N    E + +     IL +NP  F  K
Subjt:  NNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYEDTFEAVKQEILSKNPSVFSSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACACGGTTTGGATCCTCAGCAACAATAGAGAAGCTGCGATTGGTGATGATGAATGCAAGATCAGCCATTTCCATGAAACTAAAAATTTCTGTGATGAGCTGTCGGT
CGAGCAATCGGTGTCTTCGGACGTCTCTATAAATGAGATGATTAATAGTGAAAATAATAAGAAATCAAAAGTGGAAAATGGAAATAAAGTCAGCCCATGTTGCAATTGCA
AAAAAAACGAGTGCCTAAAACTATATTGTGAATGCTTTGCAAGTGGTATGTATTGCCGCAAGGATGTTTGTGGCAGTACAGATTGCTCTAATATTCCTTTGTATGAGGAC
ACATTTGAGGCTGTAAAGCAAGAAATTCTATCCAAAAATCCCTCAGTTTTTTCTTCAAAAGAAGTACAAGAGGATGGGAGAACAAAAAAAACAACTTCATCTACAGAAAG
AAGAGGATGCAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAGTGCAAGCAGTCAAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACACGGTTTGGATCCTCAGCAACAATAGAGAAGCTGCGATTGGTGATGATGAATGCAAGATCAGCCATTTCCATGAAACTAAAAATTTCTGTGATGAGCTGTCGGT
CGAGCAATCGGTGTCTTCGGACGTCTCTATAAATGAGATGATTAATAGTGAAAATAATAAGAAATCAAAAGTGGAAAATGGAAATAAAGTCAGCCCATGTTGCAATTGCA
AAAAAAACGAGTGCCTAAAACTATATTGTGAATGCTTTGCAAGTGGTATGTATTGCCGCAAGGATGTTTGTGGCAGTACAGATTGCTCTAATATTCCTTTGTATGAGGAC
ACATTTGAGGCTGTAAAGCAAGAAATTCTATCCAAAAATCCCTCAGTTTTTTCTTCAAAAGAAGTACAAGAGGATGGGAGAACAAAAAAAACAACTTCATCTACAGAAAG
AAGAGGATGCAAAAACAACTTCATCTACAGAAAGAAGAGGATGCAAGTGCAAGCAGTCAAAGTGTGA
Protein sequenceShow/hide protein sequence
MYTVWILSNNREAAIGDDECKISHFHETKNFCDELSVEQSVSSDVSINEMINSENNKKSKVENGNKVSPCCNCKKNECLKLYCECFASGMYCRKDVCGSTDCSNIPLYED
TFEAVKQEILSKNPSVFSSKEVQEDGRTKKTTSSTERRGCKNNFIYRKKRMQVQAVKV