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Lsi09G010890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G010890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein tesmin/TSO1-like CXC 2
Genome locationchr09:17279793..17281716
RNA-Seq ExpressionLsi09G010890
SyntenyLsi09G010890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52869.1 hypothetical protein Csa_014688 [Cucumis sativus]6.1e-0548.35Show/hide
Query:  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRSTKRKREKEKVEDGNKARP-RCNCKKSQCLKL
        ++E N  I Y N +D +PY NF SN++ +NPN     + + +S   S N+ NN  + S STKRKR+K +VE+ N + P RCNCKKSQCLKL
Subjt:  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRSTKRKREKEKVEDGNKARP-RCNCKKSQCLKL

XP_008454271.1 PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo]6.7e-1238.55Show/hide
Query:  MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS------------TWVLTNNGSDAENICTELSVEKNDSIVYQN
        MSS+GLA+ST  E   +          NL    +L I   RALP++PPSS++ RGD S                 +N    +NIC  LSVEKND + Y N
Subjt:  MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS------------TWVLTNNGSDAENICTELSVEKNDSIVYQN

Query:  SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL
                     KN+  NN++R +++Q S   S+ND   N++P+ +TKRK  K KVEDG KA P C+C  K ++CL L
Subjt:  SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL

XP_038878069.1 protein tesmin/TSO1-like CXC 2 [Benincasa hispida]9.6e-3557.22Show/hide
Query:  MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRI-DCERALPTRPPSSMYPRGDQSTWVLTNNGS--------------DAENICTELSVEKNDSIV
        MSS+ LASSTH EL   E+FDYMDLINNL HFDKLRI D ER+LPTRPPS+MY RGD +    +N+                +  NIC EL VEKN+ + 
Subjt:  MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRI-DCERALPTRPPSSMYPRGDQSTWVLTNNGS--------------DAENICTELSVEKNDSIV

Query:  YQNSDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNNSPSRSTKRKREKEKVEDGNK--ARPRCNCKKSQCLKL
        YQN D VPY NF S +KN NPNNDVR N  QMSS  S +  NN    S+KRKREK KVE+ NK  + PRCNC KS+CL L
Subjt:  YQNSDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNNSPSRSTKRKREKEKVEDGNK--ARPRCNCKKSQCLKL

TrEMBL top hitse value%identityAlignment
A0A0A0KVD1 CRC domain-containing protein2.9e-0548.35Show/hide
Query:  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRSTKRKREKEKVEDGNKARP-RCNCKKSQCLKL
        ++E N  I Y N +D +PY NF SN++ +NPN     + + +S   S N+ NN  + S STKRKR+K +VE+ N + P RCNCKKSQCLKL
Subjt:  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRSTKRKREKEKVEDGNKARP-RCNCKKSQCLKL

A0A1S3BY78 protein tesmin/TSO1-like CXC 23.2e-1238.55Show/hide
Query:  MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS------------TWVLTNNGSDAENICTELSVEKNDSIVYQN
        MSS+GLA+ST  E   +          NL    +L I   RALP++PPSS++ RGD S                 +N    +NIC  LSVEKND + Y N
Subjt:  MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS------------TWVLTNNGSDAENICTELSVEKNDSIVYQN

Query:  SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL
                     KN+  NN++R +++Q S   S+ND   N++P+ +TKRK  K KVEDG KA P C+C  K ++CL L
Subjt:  SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGAT
AGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTA
CTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTA
AGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAA
TAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGAT
AGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTA
CTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTA
AGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAA
TAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA
Protein sequenceShow/hide protein sequence
MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQSTWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNNDV
RKNKQQMSSSDSVNDKNNSPSRSTKRKREKEKVEDGNKARPRCNCKKSQCLKL