; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G011410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G011410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsmall EDRK-rich factor 2
Genome locationchr09:18301811..18308313
RNA-Seq ExpressionLsi09G011410
SyntenyLsi09G011410
Gene Ontology termsNA
InterPro domainsIPR007513 - Uncharacterised protein family SERF, N-terminal
IPR040211 - Small EDRK-rich factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9592102.1 hypothetical protein Lalb_Chr19g0125681 [Lupinus albus]2.1e-1489.09Show/hide
Query:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN KGK KDDGLTPEQRRERDAKALQEKTAKKAAQA  G N+SGG
Subjt:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

KAF1884038.1 hypothetical protein Lal_00012998 [Lupinus albus]2.1e-1489.09Show/hide
Query:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN KGK KDDGLTPEQRRERDAKALQEKTAKKAAQA  G N+SGG
Subjt:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

OIW01280.1 hypothetical protein TanjilG_10441 [Lupinus angustifolius]1.6e-1490.91Show/hide
Query:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN KGK KDDGLTPEQRRERDAKALQEKTAKKAAQAA G N+SGG
Subjt:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

XP_004138960.1 small EDRK-rich factor 2 [Cucumis sativus]4.3e-1594.64Show/hide
Query:  REKDRERAQARN-PKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN  KGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA SGGNSSGG
Subjt:  REKDRERAQARN-PKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

XP_019459300.1 PREDICTED: small EDRK-rich factor 2 [Lupinus angustifolius]1.6e-1490.91Show/hide
Query:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN KGK KDDGLTPEQRRERDAKALQEKTAKKAAQAA G N+SGG
Subjt:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

TrEMBL top hitse value%identityAlignment
A0A0A0LHU5 4F5 domain-containing protein2.1e-1594.64Show/hide
Query:  REKDRERAQARN-PKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN  KGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA SGGNSSGG
Subjt:  REKDRERAQARN-PKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

A0A4P1R4V8 4F5 domain-containing protein8.0e-1590.91Show/hide
Query:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN KGK KDDGLTPEQRRERDAKALQEKTAKKAAQAA G N+SGG
Subjt:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

A0A5A7SS85 Small EDRK-rich factor 21.4e-1492.86Show/hide
Query:  REKDRERAQARN-PKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN  KGK KDDGLTPEQRRERDAKALQEK AKKAAQAASGGNSSGG
Subjt:  REKDRERAQARN-PKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

A0A6A4NRM2 4F5 domain-containing protein1.0e-1489.09Show/hide
Query:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN KGK KDDGLTPEQRRERDAKALQEKTAKKAAQA  G N+SGG
Subjt:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

A0A6A5NHN4 4F5 domain-containing protein1.0e-1489.09Show/hide
Query:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        REKDRERAQARN KGK KDDGLTPEQRRERDAKALQEKTAKKAAQA  G N+SGG
Subjt:  REKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24100.1 Uncharacterised protein family SERF6.0e-1582.14Show/hide
Query:  REKDRERAQAR-NPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG
        RE+DRERA AR   KGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAA+  +S GG
Subjt:  REKDRERAQAR-NPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGG

AT4G13615.1 Uncharacterised protein family SERF1.6e-1273.77Show/hide
Query:  REKDRERAQAR-NPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA--ASGGNSSGGSHA
        RE+DRERA AR   KGKN DDGLTPEQRRERD KALQEK AKKAAQA  AS G ++GG  A
Subjt:  REKDRERAQAR-NPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQA--ASGGNSSGGSHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGCACTTTTCTCTTCCAATGGCTGCCTTCCTTCTTGCTCTTGCTTTGGCATGTCTTGCCATTGATGCTCTTGATAGGGAGAAGGATCGAGAGAGGGCTCAGGC
TCGCAACCCTAAGGGTAAAAACAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGGATGCTAAGGCGCTACAAGAGAAGACCGCGAAGAAGGCGGCTCAGGCGG
CATCCGGAGGTAATTCATCTGGAGGTTCTCATGCCAGAATTAGTCTTGGGGTAATAGCAAGTTATGATCCTATCATTGAGTTAGATTTCTGTTGTTACAAATTAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGCACTTTTCTCTTCCAATGGCTGCCTTCCTTCTTGCTCTTGCTTTGGCATGTCTTGCCATTGATGCTCTTGATAGGGAGAAGGATCGAGAGAGGGCTCAGGC
TCGCAACCCTAAGGGTAAAAACAAGGACGATGGTTTGACCCCCGAGCAGCGCCGTGAAAGGGATGCTAAGGCGCTACAAGAGAAGACCGCGAAGAAGGCGGCTCAGGCGG
CATCCGGAGGTAATTCATCTGGAGGTTCTCATGCCAGAATTAGTCTTGGGGTAATAGCAAGTTATGATCCTATCATTGAGTTAGATTTCTGTTGTTACAAATTAAAATGA
Protein sequenceShow/hide protein sequence
MAKHFSLPMAAFLLALALACLAIDALDREKDRERAQARNPKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAASGGNSSGGSHARISLGVIASYDPIIELDFCCYKLK