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Lsi09G011440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G011440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionubiquitin-conjugating enzyme E2 E2-like
Genome locationchr09:18348809..18349306
RNA-Seq ExpressionLsi09G011440
SyntenyLsi09G011440
Gene Ontology termsGO:0000209 - protein polyubiquitination (biological process)
GO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0061631 - ubiquitin conjugating enzyme activity (molecular function)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026112.1 Ubiquitin-conjugating enzyme E2 D1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3357.33Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIENELKVMN-SAATHCSF
        MVLSRL  CFS+K SSST Y R + PP          P ++PP      D D              G  G GN+EK+SAMYRIENEL+ MN +AATHCSF
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIENELKVMN-SAATHCSF

Query:  GPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        GP G DI RWEG+VIGP  SCY+GGIFHLSIQFP +YPLSPP IKF+TK+
Subjt:  GPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

XP_022138687.1 ubiquitin-conjugating enzyme E2 5A-like [Momordica charantia]1.8e-3657.83Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYA----PPLSIADRVYARPNSAPPSPLPIY------------DDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIE
        MVLSRLRRCFSSK SSS++Y RL +    PPL I    Y  P   PP P+PI             D    R E  PP+ + IG GG G++EK+SAMYRIE
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYA----PPLSIADRVYARPNSAPPSPLPIY------------DDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIE

Query:  NELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        NELK MN  +ATHCSFGP G DIFRWEG+VIGP  SCYE GIF LSI  P DYP +PP IKF TK+
Subjt:  NELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

XP_023000037.1 ubiquitin-conjugating enzyme E2 E3-like [Cucurbita maxima]2.0e-3243.17Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYA--------------------------------------PPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPP-
        MVL RL  CFS+K SSST Y RL+                                       PPL I    Y  PN A   P+PI D+   + E  PP 
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYA--------------------------------------PPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPP-

Query:  --------------QMIPI------------------------GNGGRGNKEKSSAMYRIENELKVMNS-AATHCSFGPAGCDIFRWEGVVIGPTCSCYE
                      Q +PI                        G  G GN+EK+S+MYRIENEL+ MN  AATHCSFGP G DIFRWEGVVIGP  SCY+
Subjt:  --------------QMIPI------------------------GNGGRGNKEKSSAMYRIENELKVMNS-AATHCSFGPAGCDIFRWEGVVIGPTCSCYE

Query:  GGIFHLSIQFPFDYPLSPPDIKFITKV
        GGIFHLSIQFP +YPLSPP IKF+TK+
Subjt:  GGIFHLSIQFPFDYPLSPPDIKFITKV

XP_023513655.1 ubiquitin-conjugating enzyme E2 E3-like [Cucurbita pepo subsp. pepo]1.4e-3342.98Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYAP---------------------PLSIADRVYARPNSAPPS-----------------PLPIYDDDRNRSESPPP-
        MVLS L  CFS+K SSST Y RL+ P                     P+ I D V+ +P  +PP                  P+PI D+   + E  PP 
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYAP---------------------PLSIADRVYARPNSAPPS-----------------PLPIYDDDRNRSESPPP-

Query:  --------------QMIPI-------------------------GNGGRGNKEKSSAMYRIENELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCY
                      Q +PI                         G  G GN+EK+SAMYRIENEL+ MN +AATHCSFGP G DI RWEGVVIGP  SCY
Subjt:  --------------QMIPI-------------------------GNGGRGNKEKSSAMYRIENELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCY

Query:  EGGIFHLSIQFPFDYPLSPPDIKFITKV
        +GGIFHLSIQFP +YPLSPP IKF+TK+
Subjt:  EGGIFHLSIQFPFDYPLSPPDIKFITKV

XP_038907075.1 ubiquitin-conjugating enzyme E2 D1-like [Benincasa hispida]4.3e-4366Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIENELKVMN-SAATHCSF
        M  SRLRRCFSS  SSS+AYRRLY+PP  I+D +  +PN   PSP PI+              I IG+GG GN+EKSSAMYRIENEL+ MN  AATHCSF
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIENELKVMN-SAATHCSF

Query:  GPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        GP G DIFRWEGVVIGP CSCYEGGIF LSIQFP +YPL PP IKF+TK+
Subjt:  GPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

TrEMBL top hitse value%identityAlignment
A0A0A0LI75 UBC core domain-containing protein1.4e-2648.75Show/hide
Query:  MVLSRLRRCFSSKSSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDR---NRSESPPPQMIPIGNGGRGNKEKSS-AMYRIENELKVMN-SAATH
        M  SRLRRCFS K                       P+   P+  P+  +++    R      + I  GN    N+EKSS AMYRIENELK MN   ATH
Subjt:  MVLSRLRRCFSSKSSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDR---NRSESPPPQMIPIGNGGRGNKEKSS-AMYRIENELKVMN-SAATH

Query:  CSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKVSYVHFHI
        CSFGP G DIFRWEGVVIGP  SCYEGGIFH+SIQFP DYP +PP I F+TK+ + +  +
Subjt:  CSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKVSYVHFHI

A0A1S3C6C4 ubiquitin-conjugating enzyme E2 D1-like2.0e-3055.33Show/hide
Query:  MVLSRLRRCFSSKSSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPPQMIPIGNGGRGNKEKSS-AMYRIENELKVMN-SAATHCSF
        M+ SRLRRCF+ K SS +Y     PP+ +      +  S P   +   DDD  R           GN    N+EKSS AMYRIENELK MN   ATHCSF
Subjt:  MVLSRLRRCFSSKSSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPPQMIPIGNGGRGNKEKSS-AMYRIENELKVMN-SAATHCSF

Query:  GPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        GP G DIFRWEG+VIGP CSCYEGGIFH+SIQFP DYP +PP I F+TK+
Subjt:  GPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

A0A6J1CDR5 ubiquitin-conjugating enzyme E2 5A-like8.6e-3757.83Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYA----PPLSIADRVYARPNSAPPSPLPIY------------DDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIE
        MVLSRLRRCFSSK SSS++Y RL +    PPL I    Y  P   PP P+PI             D    R E  PP+ + IG GG G++EK+SAMYRIE
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYA----PPLSIADRVYARPNSAPPSPLPIY------------DDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIE

Query:  NELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        NELK MN  +ATHCSFGP G DIFRWEG+VIGP  SCYE GIF LSI  P DYP +PP IKF TK+
Subjt:  NELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

A0A6J1HIF1 ubiquitin-conjugating enzyme E2 E2-like1.4e-3141.67Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYAP----------------------PLSIADRVYARPNSAPPS-----------------PLPIYDDDRNRSESPPP
        MVLSRL  CFS+K SSST Y R + P                      P+ I D  + +P ++PP                  P+PI D+   + E  PP
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYAP----------------------PLSIADRVYARPNSAPPS-----------------PLPIYDDDRNRSESPPP

Query:  ---------------QMIPI------------------------GNGGRGNKEKSSAMYRIENELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCY
                       Q +PI                        G  G GN+EK+SAMYRIENEL+ MN +AATHCSFGP G DI R EG+VIGP  SCY
Subjt:  ---------------QMIPI------------------------GNGGRGNKEKSSAMYRIENELKVMN-SAATHCSFGPAGCDIFRWEGVVIGPTCSCY

Query:  EGGIFHLSIQFPFDYPLSPPDIKFITKV
        +GGIFHLSIQFP +YPLSPP IKF+TK+
Subjt:  EGGIFHLSIQFPFDYPLSPPDIKFITKV

A0A6J1KCF2 ubiquitin-conjugating enzyme E2 E3-like9.8e-3343.17Show/hide
Query:  MVLSRLRRCFSSK-SSSTAYRRLYA--------------------------------------PPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPP-
        MVL RL  CFS+K SSST Y RL+                                       PPL I    Y  PN A   P+PI D+   + E  PP 
Subjt:  MVLSRLRRCFSSK-SSSTAYRRLYA--------------------------------------PPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPP-

Query:  --------------QMIPI------------------------GNGGRGNKEKSSAMYRIENELKVMNS-AATHCSFGPAGCDIFRWEGVVIGPTCSCYE
                      Q +PI                        G  G GN+EK+S+MYRIENEL+ MN  AATHCSFGP G DIFRWEGVVIGP  SCY+
Subjt:  --------------QMIPI------------------------GNGGRGNKEKSSAMYRIENELKVMNS-AATHCSFGPAGCDIFRWEGVVIGPTCSCYE

Query:  GGIFHLSIQFPFDYPLSPPDIKFITKV
        GGIFHLSIQFP +YPLSPP IKF+TK+
Subjt:  GGIFHLSIQFPFDYPLSPPDIKFITKV

SwissProt top hitse value%identityAlignment
D3ZDK2 Ubiquitin-conjugating enzyme E2 D18.9e-1545.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A+ RI+ EL  +      HCS GP G D+F W+  ++GP  S Y+GG+F L++ FP DYP  PP I F TK+
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

P51668 Ubiquitin-conjugating enzyme E2 D18.9e-1545.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A+ RI+ EL  +      HCS GP G D+F W+  ++GP  S Y+GG+F L++ FP DYP  PP I F TK+
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

P61080 Ubiquitin-conjugating enzyme E2 D18.9e-1545.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A+ RI+ EL  +      HCS GP G D+F W+  ++GP  S Y+GG+F L++ FP DYP  PP I F TK+
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

Q2TA10 Ubiquitin-conjugating enzyme E2 D18.9e-1545.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A+ RI+ EL  +      HCS GP G D+F W+  ++GP  S Y+GG+F L++ FP DYP  PP I F TK+
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

Q9Y2X8 Ubiquitin-conjugating enzyme E2 D41.7e-1344.44Show/hide
Query:  AMYRIENEL-KVMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A+ RI+ EL  +       CS GP G D+F W+  ++GP  S Y+GG+F L+I FP DYP  PP + F TK+
Subjt:  AMYRIENEL-KVMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

Arabidopsis top hitse value%identityAlignment
AT1G64230.1 ubiquitin-conjugating enzyme 286.5e-1345.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A  RI  ELK +     T CS GP   D+F W+  ++GP+ S Y GG+F ++I FP DYP  PP + F TKV
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

AT1G64230.2 ubiquitin-conjugating enzyme 286.5e-1345.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A  RI  ELK +     T CS GP   D+F W+  ++GP+ S Y GG+F ++I FP DYP  PP + F TKV
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

AT2G16740.1 ubiquitin-conjugating enzyme 291.1e-1245.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A  RI  ELK +       CS GP G D+F W+  ++GP  S Y GG+F ++I FP DYP  PP + F TKV
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

AT3G08690.1 ubiquitin-conjugating enzyme 111.1e-1245.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A  RI  ELK +     ++CS GP   D+F W+  ++GP  S Y GG+F +SI FP DYP  PP + F TKV
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV

AT4G27960.1 ubiquitin conjugating enzyme 96.5e-1345.83Show/hide
Query:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV
        A  RI  ELK +     T CS GP   D+F W+  ++GP+ S Y GG+F ++I FP DYP  PP + F TKV
Subjt:  AMYRIENELK-VMNSAATHCSFGPAGCDIFRWEGVVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTTCCCGTCTCCGCCGTTGCTTCTCCTCAAAATCCTCTTCCACCGCCTACCGCCGCCTCTACGCTCCTCCTCTTTCTATCGCTGACAGAGTCTATGCTCGGCC
AAATTCTGCGCCGCCGTCTCCTCTTCCAATCTACGACGATGATCGTAACCGGTCAGAGTCTCCGCCGCCGCAGATGATTCCGATCGGCAACGGCGGAAGAGGAAATAAAG
AAAAAAGTAGTGCGATGTATAGGATAGAGAACGAGTTGAAAGTGATGAACTCTGCGGCGACGCACTGTAGCTTCGGACCGGCCGGCTGCGATATTTTCCGGTGGGAAGGG
GTTGTGATTGGGCCGACTTGTTCTTGCTATGAAGGCGGTATTTTTCACCTTTCAATTCAATTTCCCTTCGATTACCCTTTAAGTCCTCCCGACATCAAGTTTATAACCAA
GGTTAGTTATGTCCATTTTCATATTTTATATTTTCTCAATTTTTGGCTCTCTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTTTCCCGTCTCCGCCGTTGCTTCTCCTCAAAATCCTCTTCCACCGCCTACCGCCGCCTCTACGCTCCTCCTCTTTCTATCGCTGACAGAGTCTATGCTCGGCC
AAATTCTGCGCCGCCGTCTCCTCTTCCAATCTACGACGATGATCGTAACCGGTCAGAGTCTCCGCCGCCGCAGATGATTCCGATCGGCAACGGCGGAAGAGGAAATAAAG
AAAAAAGTAGTGCGATGTATAGGATAGAGAACGAGTTGAAAGTGATGAACTCTGCGGCGACGCACTGTAGCTTCGGACCGGCCGGCTGCGATATTTTCCGGTGGGAAGGG
GTTGTGATTGGGCCGACTTGTTCTTGCTATGAAGGCGGTATTTTTCACCTTTCAATTCAATTTCCCTTCGATTACCCTTTAAGTCCTCCCGACATCAAGTTTATAACCAA
GGTTAGTTATGTCCATTTTCATATTTTATATTTTCTCAATTTTTGGCTCTCTGTCTGA
Protein sequenceShow/hide protein sequence
MVLSRLRRCFSSKSSSTAYRRLYAPPLSIADRVYARPNSAPPSPLPIYDDDRNRSESPPPQMIPIGNGGRGNKEKSSAMYRIENELKVMNSAATHCSFGPAGCDIFRWEG
VVIGPTCSCYEGGIFHLSIQFPFDYPLSPPDIKFITKVSYVHFHILYFLNFWLSV