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Lsi09G012490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G012490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr09:20162195..20162530
RNA-Seq ExpressionLsi09G012490
SyntenyLsi09G012490
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593848.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.3e-3877.78Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST-----QHHHHKESEPEKPPVFKKWQHPAA
        MA+S RR S   +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT DS   SS+S+      HHHHKESEPEKPPVFKKWQHPAA
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST-----QHHHHKESEPEKPPVFKKWQHPAA

Query:  PFHYDSGPRAPR-FVPV
        PFHYDSG RAPR FVPV
Subjt:  PFHYDSGPRAPR-FVPV

XP_008460625.2 PREDICTED: uncharacterized protein At4g14450, chloroplastic-like [Cucumis melo]1.1e-4579.53Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----------------QHHHHKESEPEKP
        MADSHRRTS   +RHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASS S+                QH HHKE E EK 
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----------------QHHHHKESEPEKP

Query:  PVFKKWQHPAAPFHYDSGPRAPRFVPV
        PVFKKWQHPAAPFHYDSGPRAPRFVPV
Subjt:  PVFKKWQHPAAPFHYDSGPRAPRFVPV

XP_022930471.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata]2.8e-3879.82Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST--QHHHHKESEPEKPPVFKKWQHPAAPFH
        MA+S RR S   +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT DS   SS+S+   HHHHKESEPEKPPVFKKWQHPAAPFH
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST--QHHHHKESEPEKPPVFKKWQHPAAPFH

Query:  YDSGPRAPR-FVPV
        YDSG RAPR FVPV
Subjt:  YDSGPRAPR-FVPV

XP_023000559.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima]1.3e-3879.31Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----QHHHHKESEPEKPPVFKKWQHPAAP
        MA+S RR S A +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT DS   SS+S+     HHHHKESEPEKPPVFKKWQHPAAP
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----QHHHHKESEPEKPPVFKKWQHPAAP

Query:  FHYDSGPRAPR-FVPV
        FHYDSG RAPR FVPV
Subjt:  FHYDSGPRAPR-FVPV

XP_038875425.1 uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida]5.3e-5395.5Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFHYD
        MADSHRRTS A  RHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASS+S+QHHHHKESEPEKPPVFKKWQHPAAPFHYD
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFHYD

Query:  SGPRAPRFVPV
        SGPRAPRFVPV
Subjt:  SGPRAPRFVPV

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ8 Uncharacterized protein9.8e-3773.98Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSP-SSPKDIQNW-TPDSREASSTST----------QHHHHKESEPEKPPVFK
        MADSH  TS A +     PSRLQRRAPASLQINRSDWKVAIPLLSPLVSP SSPKDI +W TPDSR+ SST++           HHHHKES+PEK PVFK
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSP-SSPKDIQNW-TPDSREASSTST----------QHHHHKESEPEKPPVFK

Query:  KWQHPAAPFHYDSGPRAPRFVPV
        KWQHPAAPFHYDSG RAPRFVPV
Subjt:  KWQHPAAPFHYDSGPRAPRFVPV

A0A1S3CDB1 uncharacterized protein At4g14450, chloroplastic-like5.2e-4679.53Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----------------QHHHHKESEPEKP
        MADSHRRTS   +RHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASS S+                QH HHKE E EK 
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----------------QHHHHKESEPEKP

Query:  PVFKKWQHPAAPFHYDSGPRAPRFVPV
        PVFKKWQHPAAPFHYDSGPRAPRFVPV
Subjt:  PVFKKWQHPAAPFHYDSGPRAPRFVPV

A0A6J1ER11 uncharacterized protein At4g14450, chloroplastic-like1.4e-3879.82Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST--QHHHHKESEPEKPPVFKKWQHPAAPFH
        MA+S RR S   +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT DS   SS+S+   HHHHKESEPEKPPVFKKWQHPAAPFH
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST--QHHHHKESEPEKPPVFKKWQHPAAPFH

Query:  YDSGPRAPR-FVPV
        YDSG RAPR FVPV
Subjt:  YDSGPRAPR-FVPV

A0A6J1H320 uncharacterized protein At4g14450, chloroplastic-like7.0e-3572.41Show/hide
Query:  MADSHRRTSS---AGSRHP---QQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPA
        MADSHRRTS+   A  RHP   QQP   + RAPASLQINR DWKVAIPLL+PLVSPSSPK+IQ W P+S E SS S+   +HKESEPEKPPVFKKWQHPA
Subjt:  MADSHRRTSS---AGSRHP---QQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPA

Query:  APFHYDSGPRAPRFVP
        APF YDSGP  PRF+P
Subjt:  APFHYDSGPRAPRFVP

A0A6J1KKB8 uncharacterized protein At4g14450, chloroplastic-like6.2e-3979.31Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----QHHHHKESEPEKPPVFKKWQHPAAP
        MA+S RR S A +R  QQPSRLQRRAPASLQI+RSDWKVAIPLLSPLVSPSSP +IQNWT DS   SS+S+     HHHHKESEPEKPPVFKKWQHPAAP
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTST----QHHHHKESEPEKPPVFKKWQHPAAP

Query:  FHYDSGPRAPR-FVPV
        FHYDSG RAPR FVPV
Subjt:  FHYDSGPRAPR-FVPV

SwissProt top hitse value%identityAlignment
Q6NN02 Uncharacterized protein At4g14450, chloroplastic1.8e-1140.71Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFH
        MA + +RTSS+ + + +Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +          E E +K PVFKKWQHPA+PF 
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFH

Query:  YDSGPRAPRFVPV
        Y+     P F+ V
Subjt:  YDSGPRAPRFVPV

Arabidopsis top hitse value%identityAlignment
AT1G04330.1 unknown protein1.5e-1347.62Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFH
        M+ + R  S +G+R   + SRLQRRAP  L+IN   ++WKVAIPLLSP  SP          P    A     +    KE+  EKPPVFKKWQHPAAPF+
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASLQIN--RSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFH

Query:  YDSGP
        Y   P
Subjt:  YDSGP

AT3G23170.1 unknown protein1.8e-1147.52Show/hide
Query:  QQPSRLQRRAPASLQI----NRSDWKVAIPLLSPL-VSP-SSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVP
        +QPSRL +R PA   +      ++W  AIPLLSPL +SP SSP D     P   +  ST+           EK PVFKKWQHPAAPF+Y+S    P FVP
Subjt:  QQPSRLQRRAPASLQI----NRSDWKVAIPLLSPL-VSP-SSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVP

Query:  V
        V
Subjt:  V

AT4G14450.1 unknown protein1.3e-1240.71Show/hide
Query:  MADSHRRTSSAGSRHPQQPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFH
        MA + +RTSS+ + + +Q S+LQRRAP+ +    + S+W VAIPLLSPL    +    Q+  P  +  +          E E +K PVFKKWQHPA+PF 
Subjt:  MADSHRRTSSAGSRHPQQPSRLQRRAPASL--QINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFH

Query:  YDSGPRAPRFVPV
        Y+     P F+ V
Subjt:  YDSGPRAPRFVPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACTCACACAGACGAACCTCCAGTGCCGGCAGCCGCCATCCTCAGCAGCCAAGTCGCCTTCAACGCCGGGCTCCCGCGTCCCTGCAAATCAATCGCTCCGATTG
GAAGGTCGCCATCCCTCTCTTGTCTCCTCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGACGCCCGATTCCAGAGAAGCTTCTTCCACTTCTACTCAGCACC
ATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCC
GTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGACTCACACAGACGAACCTCCAGTGCCGGCAGCCGCCATCCTCAGCAGCCAAGTCGCCTTCAACGCCGGGCTCCCGCGTCCCTGCAAATCAATCGCTCCGATTG
GAAGGTCGCCATCCCTCTCTTGTCTCCTCTCGTCTCTCCTTCCTCTCCCAAAGACATCCAAAATTGGACGCCCGATTCCAGAGAAGCTTCTTCCACTTCTACTCAGCACC
ATCATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCTCCTTTTCATTACGATTCCGGTCCTAGGGCTCCCAGATTCGTACCC
GTTTAG
Protein sequenceShow/hide protein sequence
MADSHRRTSSAGSRHPQQPSRLQRRAPASLQINRSDWKVAIPLLSPLVSPSSPKDIQNWTPDSREASSTSTQHHHHKESEPEKPPVFKKWQHPAAPFHYDSGPRAPRFVP
V