CuGenDBv2

Gene ID	Lsi09G012510
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	bet1-like SNARE 1-2
Genome location	chr09:20180112..20185939
RNA-Seq Expression	Lsi09G012510
Synteny	Lsi09G012510
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0030173 - integral component of Golgi membrane (cellular component)
InterPro domains	IPR039897 - BET1-like protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004151397.1 bet1-like SNARE 1-2 [Cucumis sativus]

1.3e-23

76.14

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Query:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LHTLEDRVSILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

XP_008447527.1 PREDICTED: bet1-like SNARE 1-2 [Cucumis melo]

1.3e-23

76.14

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Query:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LHTLEDRVSILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

XP_022138310.1 bet1-like SNARE 1-2 [Momordica charantia]

3.6e-23

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Query:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LH+LEDRVSILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

XP_038906833.1 bet1-like SNARE 1-2 isoform X1 [Benincasa hispida]

2.5e-24

70.1

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Query:  FNSSLFAIEREHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        F S +F   +EHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LHTLEDR+SILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  FNSSLFAIEREHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

XP_038906834.1 bet1-like SNARE 1-2 isoform X2 [Benincasa hispida]

1.6e-23

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Query:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LHTLEDR+SILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L808 t-SNARE coiled-coil homology domain-containing protein

6.1e-24

76.14

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Query:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LHTLEDRVSILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

A0A1S3BHN2 bet1-like SNARE 1-2

6.1e-24

76.14

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Query:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LHTLEDRVSILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

A0A6J1C943 bet1-like SNARE 1-2

1.8e-23

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Query:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLRTSSS+EIKEHDNDK LH+LEDRVSILKR                   GNGMDASRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

A0A6J1EPS6 bet1-like SNARE 1-2

1.2e-19

69.66

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Query:  REHRSSRSALFDDLEEGGLRTS-SSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLR S S++EIKEHDND+ L TLEDRVSILKR                   GNGMD+SRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTS-SSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

A0A6J1KMZ6 bet1-like SNARE 1-2

1.2e-19

69.66

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Query:  REHRSSRSALFDDLEEGGLRTS-SSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        REHRSSRSALFDDLEEGGLR S S++EIKEHDND+ L TLEDRVSILKR                   GNGMD+SRGIMSRTMDRFKMV
Subjt:  REHRSSRSALFDDLEEGGLRTS-SSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

SwissProt top hits

e value

%identity

Alignment

Q94CG2 Bet1-like SNARE 1-2

9.7e-11

48.35

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Query:  REHRSSRSALF---DDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        RE+R+SR++LF   D LEEG LR SSS    E DND+ L  L+DRVS LKR                   GN MD++RGIMS T++RFK+V
Subjt:  REHRSSRSALF---DDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

Q9M2J9 Bet1-like SNARE 1-1

8.7e-12

47.78

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Query:  REHRSSRSALFDDLEEGGLRTSSSL--EIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        RE R  RS+LFD +EEGG+R +SS   EI EH+N++ L  L+DRV +LKR                   GN MD+SRG +S TMDRFK V
Subjt:  REHRSSRSALFDDLEEGGLRTSSSL--EIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

Arabidopsis top hits

e value

%identity

Alignment

AT3G58170.1 BET1P/SFT1P-like protein 14A

6.2e-13

47.78

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Query:  REHRSSRSALFDDLEEGGLRTSSSL--EIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        RE R  RS+LFD +EEGG+R +SS   EI EH+N++ L  L+DRV +LKR                   GN MD+SRG +S TMDRFK V
Subjt:  REHRSSRSALFDDLEEGGLRTSSSL--EIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

AT4G14455.1 Target SNARE coiled-coil domain protein

6.9e-12

48.35

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Query:  REHRSSRSALF---DDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV
        RE+R+SR++LF   D LEEG LR SSS    E DND+ L  L+DRVS LKR                   GN MD++RGIMS T++RFK+V
Subjt:  REHRSSRSALF---DDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKR-------------------GNGMDASRGIMSRTMDRFKMV

Sequences

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CDS sequence

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mRNA sequence

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ATGATTGATGGGGACTTCAATTCGTCACTGTTTGCTATTGAGAGGGAGCACCGTTCTTCTAGATCTGCTCTCTTTGATGACCTTGAGGAGGGTGGTCTCCGGACTAGCTC
TTCTCTTGAAATTAAAGAGCATGACAACGACAAAGACCTCCATACTTTGGAAGATAGAGTTTCTATTCTCAAGAGGGGAAATGGCATGGATGCTTCAAGGGGTATAATGT
CAAGAACCATGGATCGATTCAAGATGGTTCCTCAGATACTTCATGCAAAGTTAAAGTAAGGTTTCTATGTCGAATCAACTCGAAGCATCATATTAGATACGTCGCATGAT
TGTTCCGACCATGCATAGTCCTTGTTTCTAGAAGAACACTGAAATATATATCATACTTTCCTGCAATACAAGATTTGCCAAAATACATAGTTTTCAATGGAGGAGTGGAA
CAGGTGGTCATTTTTTTTCAATCACTATTCTTATTTGTTGATGGGTTAAAAGCACATCCATCAGTTTAGAATATATATCTTGATTTCAATCAGTATATTTTGCTCATGCT
TTTAAATTAAATAAGCTCTTATTTTCAGGCTAGTACAGGACAAATTGTCTCATTGACTTCCCATTATTAACTACTATTATAATCATAGTTTGGAGAGGTTTGAAAGTGGA
TTTGATTTATTGAACAGTTCCATCGTTAACAAAGATTAAGCTTATTAGTGCAAA

Protein sequence

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MIDGDFNSSLFAIEREHRSSRSALFDDLEEGGLRTSSSLEIKEHDNDKDLHTLEDRVSILKRGNGMDASRGIMSRTMDRFKMVPQILHAKLK

Lsi09G012510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome