; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G012530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G012530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr09:20202819..20203852
RNA-Seq ExpressionLsi09G012530
SyntenyLsi09G012530
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593852.1 Transcriptional regulator TAC1, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3563.4Show/hide
Query:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG
        EKLGSS  SESSS  EEQS+  V EDD  S+SF   +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  ++AS    S Q    I  STF N P F 
Subjt:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG

Query:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD
        PLL  S+V+Y    SNP GYFQ+LGD NMN WG+DLSL+IEP+KGR  +W+G+
Subjt:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD

KGN61620.1 hypothetical protein Csa_006775 [Cucumis sativus]7.2e-4870.73Show/hide
Query:  EKLGSSSCSESSSELE-EQSETVVKED-----DNYSNSFTN-IIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKL-----ASSSSSSLQS-NQI
        +KL  S+CS+SSS+ + EQ E   KED      NYS++F + IIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPK      +SSSSSSLQS NQI
Subjt:  EKLGSSSCSESSSELE-EQSETVVKED-----DNYSNSFTN-IIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKL-----ASSSSSSLQS-NQI

Query:  IGSSTFNNIPYFGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWN
        IG STFNNIPYFGPLLG SQVNYQA  SN HG       FNMN WGSDLSLQI  T GRRRLWN
Subjt:  IGSSTFNNIPYFGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWN

XP_022930490.1 probable transcriptional regulator RABBIT EARS [Cucurbita moschata]2.4e-3563.4Show/hide
Query:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG
        EKLGSS  SESSS   EQS+  V EDD  S+SF   +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  ++AS    S Q    I  STF N P F 
Subjt:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG

Query:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD
        PLL  S+V+Y    SNP GYFQ+LGD NMN WG+DLSL+IEP+KGRR +W+G+
Subjt:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD

XP_023514446.1 probable transcriptional regulator RABBIT EARS [Cucurbita pepo subsp. pepo]5.3e-3563.4Show/hide
Query:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG
        EKLGSS  SESSS  EEQS+  V EDD  S+SF   +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  ++AS    S Q    I  STF N   F 
Subjt:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG

Query:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD
        PLL  S+V+Y    SNP GYFQ+LGD NMN WG DLSL+IEP+KGRR +W+G+
Subjt:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD

XP_038875027.1 zinc finger protein 6-like [Benincasa hispida]1.3e-6085.16Show/hide
Query:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFT-NIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSST-FNNIPY
        +KLG SSCSESSSELE+  E  VKEDD YS+SFT NIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKL  SSSSSLQSNQI+G ST FN+IPY
Subjt:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFT-NIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSST-FNNIPY

Query:  FGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD
        FGPLLGRSQVNYQA  SN HGYFQQLGDFNMN WGSDLSLQI PT GRR+LWNGD
Subjt:  FGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD

TrEMBL top hitse value%identityAlignment
A0A0A0LI91 C2H2-type domain-containing protein3.5e-4870.73Show/hide
Query:  EKLGSSSCSESSSELE-EQSETVVKED-----DNYSNSFTN-IIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKL-----ASSSSSSLQS-NQI
        +KL  S+CS+SSS+ + EQ E   KED      NYS++F + IIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPK      +SSSSSSLQS NQI
Subjt:  EKLGSSSCSESSSELE-EQSETVVKED-----DNYSNSFTN-IIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKL-----ASSSSSSLQS-NQI

Query:  IGSSTFNNIPYFGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWN
        IG STFNNIPYFGPLLG SQVNYQA  SN HG       FNMN WGSDLSLQI  T GRRRLWN
Subjt:  IGSSTFNNIPYFGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWN

A0A6J1CE07 transcriptional regulator TAC1-like2.3e-3156.17Show/hide
Query:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQI----IGSSTFNNI
        EKL  SS S+SSSE E++SE ++K D  Y    TN  KRSY CIFCKRGFTNAQALGGHMNIHRKDR NKP ++ +SSSS   S+ +    I  S F N 
Subjt:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQI----IGSSTFNNI

Query:  PYFGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNP--WGSDLSLQIEPTKGRRR---LWNGD
         YF    GR +V+++   SNP GYFQ+LGD N     WGSDLSLQI P+KGR R   +WN +
Subjt:  PYFGPLLGRSQVNYQALPSNPHGYFQQLGDFNMNP--WGSDLSLQIEPTKGRRR---LWNGD

A0A6J1EX07 probable transcriptional regulator RABBIT EARS1.2e-3563.4Show/hide
Query:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG
        EKLGSS  SESSS   EQS+  V EDD  S+SF   +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  ++AS    S Q    I  STF N P F 
Subjt:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG

Query:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD
        PLL  S+V+Y    SNP GYFQ+LGD NMN WG+DLSL+IEP+KGRR +W+G+
Subjt:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD

A0A6J1KKB3 zinc finger protein GIS-like2.2e-3462.09Show/hide
Query:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG
        EKL SS  SESSS  EEQS+  V EDD  S+SF   +KRSY CIFCKRGFTNAQALGGHMNIHRKDR NK  ++AS    S QS      STF + P F 
Subjt:  EKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFG

Query:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD
        PLL  S+V+Y+A  SNP GYFQ  G+ NMN WG DLSL+IEP+KGRR +W+G+
Subjt:  PLLGRSQVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD

A0A6N2MQX2 C2H2-type domain-containing protein9.2e-1743.72Show/hide
Query:  KLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPK---LASSSSSSLQSNQII--------GS
        KLGSS    S  E+  +SE  VKED   S++ T   KRSYEC FCKRGFTNAQALGGHMNIHRKDR    PK   LASSSS S  +N+ I         S
Subjt:  KLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPK---LASSSSSSLQSNQII--------GS

Query:  STFNNI-----------PYFGPLLGRS----QVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQ-----IEPTKGRRRLWNGD
        ST  N             YF P  G S      NY+    N  G   Q    N   WG  LSL+     I+ ++G RR+ + D
Subjt:  STFNNI-----------PYFGPLLGRS----QVNYQALPSNPHGYFQQLGDFNMNPWGSDLSLQ-----IEPTKGRRRLWNGD

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 101.2e-0542.65Show/hide
Query:  IEKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDR
        +EK G     + S++     E    EDD   + +     RSY C FC+R F +AQALGGHMN+HR+DR
Subjt:  IEKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDR

Q38895 Transcriptional regulator SUPERMAN4.9e-0760.47Show/hide
Query:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSS
        RSY C FCKR F +AQALGGHMN+HR+DR     + + SSSS+
Subjt:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSS

Q9LHS9 Probable transcriptional regulator RABBIT EARS4.1e-0657.14Show/hide
Query:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSS
        RSY C FC R F +AQALGGHMN+HR+DR     +  S SS+
Subjt:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSS

Q9SLB8 Zinc finger protein 111.0e-0431.37Show/hide
Query:  ESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDR-------------------PNKPPKLASSSSSSLQSNQIIGS
        E   +    +  ++    NY         ++Y C FC+R F +AQALGGHMN+HR+DR                    N  P  +SSSSSS  +  +  S
Subjt:  ESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDR-------------------PNKPPKLASSSSSSLQSNQIIGS

Query:  ST
         T
Subjt:  ST

Q9SR34 Transcriptional regulator TAC11.1e-0643.59Show/hide
Query:  SSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSL
        +  CS+S S+   Q       DD+ + S      RSY C FC RGF+NAQALGGHMNIHR+DR     KL   +   +
Subjt:  SSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSL

Arabidopsis top hitse value%identityAlignment
AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein3.5e-0860.47Show/hide
Query:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSS
        RSY C FCKR F +AQALGGHMN+HR+DR     + + SSSS+
Subjt:  RSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSS

AT3G23140.1 C2H2 and C2HC zinc fingers superfamily protein1.7e-1037.72Show/hide
Query:  KEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSS----SSSLQSNQIIGSSTFNNIPYFGPLLGRSQVNYQALPSNPHG
        K+ D+ S S  N  +R+Y+C  CKRGFTN QALGGH NIHR++R   P   +SS     S  L S     S+ F N P + P +          P NP  
Subjt:  KEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSS----SSSLQSNQIIGSSTFNNIPYFGPLLGRSQVNYQALPSNPHG

Query:  YFQQLGDFNMNPWG
          Q  G  + +  G
Subjt:  YFQQLGDFNMNPWG

AT3G53820.1 C2H2 and C2HC zinc fingers superfamily protein9.2e-0941.18Show/hide
Query:  DNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFN-------NIPYFGPLLG
        D  S S++    R Y C FC+RGF+NAQALGGHMNIHRKDR     KL  ++     S   I +++ N        +P+F   +G
Subjt:  DNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFN-------NIPYFGPLLG

AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein1.6e-0831.82Show/hide
Query:  ELEEQSET----VVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQ--IIGSSTFNNIPYFGPLLGRSQ
        ELE+  E+      ++D   + S T    RSY C FC+R F +AQALGGHMN+HR+DR +      S+ +++ +S    ++ +S    +P    ++  + 
Subjt:  ELEEQSET----VVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQ--IIGSSTFNNIPYFGPLLGRSQ

Query:  VNYQALP-----SNPHGYFQQLGDFNMNPWGS
         N + L       NP G F   GD  +N +G+
Subjt:  VNYQALP-----SNPHGYFQQLGDFNMNPWGS

AT5G43540.1 C2H2 and C2HC zinc fingers superfamily protein8.0e-1340.17Show/hide
Query:  CSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFGPLLGRSQ
        C  SSS    ++   V+     S+S + + +R YEC FCKRGFTNAQALGGHMNIHR+DR NK  K+ + +  +L       S T         L G  Q
Subjt:  CSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFGPLLGRSQ

Query:  VNYQALPSNPHGYFQQL
        V+   L +    Y Q L
Subjt:  VNYQALPSNPHGYFQQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAAAAACTAGGAAGCAGTAGCTGCTCAGAGAGTTCAAGTGAATTAGAAGAACAATCAGAGACGGTAGTAAAGGAAGATGATAATTATTCAAACAGTTTCACCAA
TATTATTAAACGTTCATATGAATGCATATTTTGCAAACGTGGATTCACCAACGCTCAAGCTCTTGGAGGCCACATGAATATTCATAGAAAAGATAGACCCAATAAACCTC
CAAAATTGGCCTCTTCTTCTTCTTCTTCTCTTCAAAGCAACCAAATAATTGGTTCATCCACTTTCAACAACATCCCCTATTTTGGACCTCTTTTGGGTAGGTCTCAAGTG
AATTATCAAGCTTTGCCTTCTAACCCACATGGCTACTTCCAACAACTTGGAGATTTTAATATGAATCCTTGGGGGTCAGATTTGAGCCTACAAATTGAACCAACCAAGGG
GAGGAGGCGTCTTTGGAATGGCGAT
mRNA sequenceShow/hide mRNA sequence
ATGATTGAAAAACTAGGAAGCAGTAGCTGCTCAGAGAGTTCAAGTGAATTAGAAGAACAATCAGAGACGGTAGTAAAGGAAGATGATAATTATTCAAACAGTTTCACCAA
TATTATTAAACGTTCATATGAATGCATATTTTGCAAACGTGGATTCACCAACGCTCAAGCTCTTGGAGGCCACATGAATATTCATAGAAAAGATAGACCCAATAAACCTC
CAAAATTGGCCTCTTCTTCTTCTTCTTCTCTTCAAAGCAACCAAATAATTGGTTCATCCACTTTCAACAACATCCCCTATTTTGGACCTCTTTTGGGTAGGTCTCAAGTG
AATTATCAAGCTTTGCCTTCTAACCCACATGGCTACTTCCAACAACTTGGAGATTTTAATATGAATCCTTGGGGGTCAGATTTGAGCCTACAAATTGAACCAACCAAGGG
GAGGAGGCGTCTTTGGAATGGCGAT
Protein sequenceShow/hide protein sequence
MIEKLGSSSCSESSSELEEQSETVVKEDDNYSNSFTNIIKRSYECIFCKRGFTNAQALGGHMNIHRKDRPNKPPKLASSSSSSLQSNQIIGSSTFNNIPYFGPLLGRSQV
NYQALPSNPHGYFQQLGDFNMNPWGSDLSLQIEPTKGRRRLWNGD