; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G012540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G012540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr09:20209899..20210417
RNA-Seq ExpressionLsi09G012540
SyntenyLsi09G012540
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465205.1 PREDICTED: transcriptional regulator SUPERMAN [Cucumis melo]5.5e-6579.07Show/hide
Query:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEE-EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        SS    +E+R ITKPK+K Q KAKASSKH+NKREG +E+EE EKEIIV FPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKL RRS PL  +T  
Subjt:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEE-EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
        DHH DF GSSSQPIKF KLYDFSSFHGE+AD+ +DGGCKIWKKVNKFVKKK+ A  LL +SNDIDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

XP_011650145.1 zinc finger protein 3 [Cucumis sativus]2.5e-6578.49Show/hide
Query:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRA-YTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        SS    +E+R ITKPK+K Q KAKAS KHNNKREGN+E+EEEKEIIV FPWASSRA YTCGFCKRQFQSAQALGGHMNVHRRDRAKL RRS PL  +T  
Subjt:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRA-YTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
        DHH DFHGSSSQPIKF KLYDFSSFHGE+AD+ +DGGC+IWKKVNKFVKK+     LL +SNDIDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

XP_023000620.1 transcriptional regulator SUPERMAN-like [Cucurbita maxima]2.7e-4361.63Show/hide
Query:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        +   SPQEE+R   KPK             N + +  EE+EEE+E IVGF W SSRAY+CGFCKR+F+SAQALGGHMNVHRRDRAKL RRSPPL   + H
Subjt:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
             FHGSSSQPIKF KLYDFSS  GE   E  DG CKIWK V KFVK+    ++ LGSSN+IDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

XP_023514445.1 zinc finger protein 4-like [Cucurbita pepo subsp. pepo]7.7e-4360.47Show/hide
Query:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        +   SPQE++R   KP               N   G+ ++EEE+E IVGF W SSRAY+CGFCKRQF+SAQALGGHMNVHRRDRAKL RRSPPL   + H
Subjt:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
             FHGSSSQPIKF KLYDFSS  GE   E  DG CKIWK V KFVK+    ++ LGSSN+IDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

XP_038875029.1 transcriptional regulator TAC1-like [Benincasa hispida]5.7e-6280.95Show/hide
Query:  SPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQ
        SPQEE+R ITK K+K QP AKASSK+N+ RE N+E EEEKEI+VGFPWASSRAYTCGFCKR+FQSAQALGGHMNVHRRDRAKLRR   P LDSTTHDHH 
Subjt:  SPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQ

Query:  DFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
        DFHGSSSQPIKF KLYDFSSFHGEE DES DGGCKIWKKVNKFVK +     LL +SNDIDLEL+LGF
Subjt:  DFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

TrEMBL top hitse value%identityAlignment
A0A0A0LNQ1 C2H2-type domain-containing protein1.2e-6578.49Show/hide
Query:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRA-YTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        SS    +E+R ITKPK+K Q KAKAS KHNNKREGN+E+EEEKEIIV FPWASSRA YTCGFCKRQFQSAQALGGHMNVHRRDRAKL RRS PL  +T  
Subjt:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRA-YTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
        DHH DFHGSSSQPIKF KLYDFSSFHGE+AD+ +DGGC+IWKKVNKFVKK+     LL +SNDIDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

A0A1S3CPU8 transcriptional regulator SUPERMAN2.7e-6579.07Show/hide
Query:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEE-EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        SS    +E+R ITKPK+K Q KAKASSKH+NKREG +E+EE EKEIIV FPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKL RRS PL  +T  
Subjt:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEE-EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
        DHH DF GSSSQPIKF KLYDFSSFHGE+AD+ +DGGCKIWKKVNKFVKKK+ A  LL +SNDIDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

A0A5D3CAK0 Transcriptional regulator SUPERMAN2.7e-6579.07Show/hide
Query:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEE-EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        SS    +E+R ITKPK+K Q KAKASSKH+NKREG +E+EE EKEIIV FPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKL RRS PL  +T  
Subjt:  SSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEE-EKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
        DHH DF GSSSQPIKF KLYDFSSFHGE+AD+ +DGGCKIWKKVNKFVKKK+ A  LL +SNDIDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

A0A6J1EUL3 zinc finger protein 10-like8.3e-4361.05Show/hide
Query:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        +   SPQE++R   KP             +N + +  EE+EEE+E IVGF W SSRAY+CGFCKR+F+SAQALGGHMNVHRRDRAKL RRSPP LDS   
Subjt:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
             FHGSSSQPIKF KLYDFSS  GE   E  DG CKIWK V KFVK+    ++ LGSSN+IDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

A0A6J1KIV9 transcriptional regulator SUPERMAN-like1.3e-4361.63Show/hide
Query:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH
        +   SPQEE+R   KPK             N + +  EE+EEE+E IVGF W SSRAY+CGFCKR+F+SAQALGGHMNVHRRDRAKL RRSPPL   + H
Subjt:  MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH

Query:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF
             FHGSSSQPIKF KLYDFSS  GE   E  DG CKIWK V KFVK+    ++ LGSSN+IDLELRLGF
Subjt:  DHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 106.9e-1045.12Show/hide
Query:  KHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRS-----PPLLDSTTHDHHQD
        K +NK    EE    ++   G  W   R+YTC FC+R+F+SAQALGGHMNVHRRDRA+L++       P    S  +  H+D
Subjt:  KHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRS-----PPLLDSTTHDHHQD

Q38895 Transcriptional regulator SUPERMAN2.3e-1358.62Show/hide
Query:  EEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDST
        +++ + ++GF W   R+YTC FCKR+F+SAQALGGHMNVHRRDRA+LR +  P   ST
Subjt:  EEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDST

Q9LHS9 Probable transcriptional regulator RABBIT EARS2.0e-0963.04Show/hide
Query:  RAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRR--SPPLLDSTT
        R+Y+C FC R+F+SAQALGGHMNVHRRDRA+L+++  SP   D  T
Subjt:  RAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRR--SPPLLDSTT

Q9SLB8 Zinc finger protein 111.5e-0939.6Show/hide
Query:  AKASSKHNNKREGNEEDEEEKEIIVG---------FPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH----DHHQDFHGSS
        A  S++   + E  E+   +  +I+           PW   + YTC FC+R+F+SAQALGGHMNVHRRDRAKLR+    L +   H    + + +F  SS
Subjt:  AKASSKHNNKREGNEEDEEEKEIIVG---------FPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH----DHHQDFHGSS

Query:  S
        S
Subjt:  S

Q9SR34 Transcriptional regulator TAC14.4e-0934.78Show/hide
Query:  SRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLYDFSSFHGE-----EADESTDGGCKIWKKVNKFVK
        SR+Y C FC R F +AQALGGHMN+HRRDRAKLR++   L++    D   +   S +  +    L +     GE     + D+  D      +K+  +V+
Subjt:  SRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLYDFSSFHGE-----EADESTDGGCKIWKKVNKFVK

Query:  KKKEAVN---------LLGSSND-------IDLELRLG
        + K   N         + GSS+        +DLELRLG
Subjt:  KKKEAVN---------LLGSSND-------IDLELRLG

Arabidopsis top hitse value%identityAlignment
AT2G37740.1 zinc-finger protein 104.9e-1145.12Show/hide
Query:  KHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRS-----PPLLDSTTHDHHQD
        K +NK    EE    ++   G  W   R+YTC FC+R+F+SAQALGGHMNVHRRDRA+L++       P    S  +  H+D
Subjt:  KHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRS-----PPLLDSTTHDHHQD

AT2G42410.1 zinc finger protein 111.1e-1039.6Show/hide
Query:  AKASSKHNNKREGNEEDEEEKEIIVG---------FPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH----DHHQDFHGSS
        A  S++   + E  E+   +  +I+           PW   + YTC FC+R+F+SAQALGGHMNVHRRDRAKLR+    L +   H    + + +F  SS
Subjt:  AKASSKHNNKREGNEEDEEEKEIIVG---------FPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTH----DHHQDFHGSS

Query:  S
        S
Subjt:  S

AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein1.6e-1458.62Show/hide
Query:  EEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDST
        +++ + ++GF W   R+YTC FCKR+F+SAQALGGHMNVHRRDRA+LR +  P   ST
Subjt:  EEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDST

AT3G53820.1 C2H2 and C2HC zinc fingers superfamily protein1.1e-1036.29Show/hide
Query:  FPWASSRA--YTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKF
        + W+ S+A  Y C FC+R F +AQALGGHMN+HR+DRAKLR+ +    DS         +    + I+     D      +  D+ ++ G    +K N  
Subjt:  FPWASSRA--YTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSSSQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKF

Query:  VKKKKEAVNLLGSSNDIDLELRLG
        + +K     L  S++ IDLELRLG
Subjt:  VKKKKEAVNLLGSSNDIDLELRLG

AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein6.4e-1145.12Show/hide
Query:  NKREGNEEDEEEKEI----------IVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHH
        NK E  E+D+E  E+          I G  W   R+YTC FC+R+F+SAQALGGHMNVHRRDRA  R      + +     H
Subjt:  NKREGNEEDEEEKEI----------IVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGCCGCAGCCCACAAGAAGAGGTTAGATTTATAACCAAACCCAAAATAAAGTCACAACCTAAAGCTAAAGCCTCAAGCAAACATAACAACAAAAGAGAAGGAAA
TGAAGAAGATGAAGAAGAAAAAGAGATTATTGTTGGATTTCCATGGGCTTCTTCAAGAGCTTATACATGTGGTTTTTGCAAAAGACAATTTCAATCTGCACAAGCTCTTG
GTGGCCACATGAATGTTCATCGACGAGACCGAGCGAAGCTCCGCCGAAGATCTCCACCGTTGTTGGATTCAACTACTCATGATCATCATCAAGATTTTCATGGATCCTCA
TCTCAACCCATTAAGTTTTTTAAACTTTATGATTTCTCAAGCTTTCATGGTGAAGAAGCTGATGAATCTACAGATGGAGGATGTAAGATTTGGAAGAAGGTTAACAAGTT
TGTGAAGAAGAAGAAGGAGGCTGTTAATTTGCTTGGTAGTTCTAATGACATAGATTTGGAACTTAGATTAGGGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGCCGCAGCCCACAAGAAGAGGTTAGATTTATAACCAAACCCAAAATAAAGTCACAACCTAAAGCTAAAGCCTCAAGCAAACATAACAACAAAAGAGAAGGAAA
TGAAGAAGATGAAGAAGAAAAAGAGATTATTGTTGGATTTCCATGGGCTTCTTCAAGAGCTTATACATGTGGTTTTTGCAAAAGACAATTTCAATCTGCACAAGCTCTTG
GTGGCCACATGAATGTTCATCGACGAGACCGAGCGAAGCTCCGCCGAAGATCTCCACCGTTGTTGGATTCAACTACTCATGATCATCATCAAGATTTTCATGGATCCTCA
TCTCAACCCATTAAGTTTTTTAAACTTTATGATTTCTCAAGCTTTCATGGTGAAGAAGCTGATGAATCTACAGATGGAGGATGTAAGATTTGGAAGAAGGTTAACAAGTT
TGTGAAGAAGAAGAAGGAGGCTGTTAATTTGCTTGGTAGTTCTAATGACATAGATTTGGAACTTAGATTAGGGTTTTAA
Protein sequenceShow/hide protein sequence
MSSRSPQEEVRFITKPKIKSQPKAKASSKHNNKREGNEEDEEEKEIIVGFPWASSRAYTCGFCKRQFQSAQALGGHMNVHRRDRAKLRRRSPPLLDSTTHDHHQDFHGSS
SQPIKFFKLYDFSSFHGEEADESTDGGCKIWKKVNKFVKKKKEAVNLLGSSNDIDLELRLGF