CuGenDBv2

Gene ID	Lsi09G013190
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	chr09:21050761..21052666
RNA-Seq Expression	Lsi09G013190
Synteny	Lsi09G013190
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0040790.1 photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa]

3.7e-92

87.38

Show/hide

Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        M +FIQAKICP TI TL+RSL SENG KL SRSQV LPS+ +CRRHL+WNGMSLVVFLTFNNGL PSSA AEE PN+ EE+DNGVIGTIKSIFDPNERTK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESYVVLEKAIRSLAGFYAKAGPSAPL EAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAE  L
Subjt:  KAEEFL

XP_008447146.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo]

9.8e-93

87.86

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Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        M +FIQAKICP TISTL+RSL SENG KL SRSQV LPS+ +CRRHL+WNGMSLVVFLTFNNGL PSSA AEE PN+ EE+DNGVIGTIKSIFDPNERTK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESYVVLEKAIRSLAGFYAKAGPSAPL EAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAE  L
Subjt:  KAEEFL

XP_011659022.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus]

1.8e-91

86.89

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Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        M +FI AKICPTTISTL+RSL SE G KL SRS+VVLP + VCRRHL+WNGMSLVVFLTFNNGL PSSA AEE PN+ EE+DNGVIGTIKSIFDPNE+TK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGK+LPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYLSNWLG+QTVVQEESYVVLEKAIRSLAGFYAKAGPSAPL EAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        K EE L
Subjt:  KAEEFL

XP_023549108.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo]

2.7e-90

86.89

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Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        MT+FIQAKICP TISTL+R + SENGHKLRSRSQVVLPS+ +CRR+L+ NGMSLV FLTFNN L P  A AEE PND EE++NGVIGTIKSIFDPNERTK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESY VLEKAIRSLAGFYAKAGPSAPL E VKSDILNDLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]

1.5e-93

89.32

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Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        M +FIQA ICPTTISTL+R+L+SENGHKLRSRSQVVLPS+ VCRRHLM +GMSLVVFLT NNGL PSSA AEETPND EE+DNGVIGTIKSIFDPNE+TK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYLSNWLGQ+TVV+EESYVVLEKAI+SLAGFYAKAGPSAPL EAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K400 Uncharacterized protein

8.9e-92

86.89

Show/hide

Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        M +FI AKICPTTISTL+RSL SE G KL SRS+VVLP + VCRRHL+WNGMSLVVFLTFNNGL PSSA AEE PN+ EE+DNGVIGTIKSIFDPNE+TK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGK+LPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYLSNWLG+QTVVQEESYVVLEKAIRSLAGFYAKAGPSAPL EAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        K EE L
Subjt:  KAEEFL

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

4.7e-93

87.86

Show/hide

Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        M +FIQAKICP TISTL+RSL SENG KL SRSQV LPS+ +CRRHL+WNGMSLVVFLTFNNGL PSSA AEE PN+ EE+DNGVIGTIKSIFDPNERTK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESYVVLEKAIRSLAGFYAKAGPSAPL EAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAE  L
Subjt:  KAEEFL

A0A5D3D0K6 Photosystem II D1 processing protein PSB27-H2

1.8e-92

87.38

Show/hide

Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        M +FIQAKICP TI TL+RSL SENG KL SRSQV LPS+ +CRRHL+WNGMSLVVFLTFNNGL PSSA AEE PN+ EE+DNGVIGTIKSIFDPNERTK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESYVVLEKAIRSLAGFYAKAGPSAPL EAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAE  L
Subjt:  KAEEFL

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.7e-90

86.89

Show/hide

Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        MT+FIQAKICP TISTL+R + SENGHKLRSRSQVVLPS+ +CRR L+ NGMS V FLTFNN L P  A AEE PNDKEE++NGVIGTIKSIFDPNERTK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESY VLEKAIRSLAGFYAKAGPSAPL E VKSDILNDLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.2e-89

85.92

Show/hide

Query:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK
        MT+FIQAKICP TIST +R + SENGHKLRS SQVVLPS+ +CRR L+ NGMSLV FLTFNN L P  A AEETPN KEE++NGVIGTIKSIFDPNERTK
Subjt:  MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD
        SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESY VLEKAIRSLAGFYAKAGPSAPL E VKSDILNDLD
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

SwissProt top hits

e value

%identity

Alignment

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

6.4e-47

70.9

Show/hide

Query:  ETPNDKEEDDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIR
        +   +K ++  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+ KD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESYV LE  IR
Subjt:  ETPNDKEEDDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIR

Query:  SLAGFYAKAGPSAPLSEAVKSDILNDLDKAEEFL
        +LA FY+KAGPSAPL + VK++IL+DL+KAEEFL
Subjt:  SLAGFYAKAGPSAPLSEAVKSDILNDLDKAEEFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G05385.1 photosystem II 11 kDa protein-related

4.6e-48

70.9

Show/hide

Query:  ETPNDKEEDDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIR
        +   +K ++  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+ KD AKFRR+ADAAKESIRDYLSNW GQ+TV  EESYV LE  IR
Subjt:  ETPNDKEEDDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIR

Query:  SLAGFYAKAGPSAPLSEAVKSDILNDLDKAEEFL
        +LA FY+KAGPSAPL + VK++IL+DL+KAEEFL
Subjt:  SLAGFYAKAGPSAPLSEAVKSDILNDLDKAEEFL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTTCTTTTATTCAAGCAAAGATCTGCCCTACAACTATTTCAACATTGAATAGAAGCTTAAGAAGTGAAAATGGCCATAAACTGCGATCCAGGTCTCAAGTTGTGCT
TCCATCTGAAGGAGTTTGTAGACGTCATTTAATGTGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGGCACCATCTTCGGCCTGGGCCGAAGAAA
CGCCAAATGATAAGGAGGAAGATGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAGAGAACCAAATCAGGAAAAGTATTGCCAAAGGCTTACCTG
AAGTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGTACTGCAGATGCTGCAAAAGAATCCATTCGAGA
CTATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTGCTAGAGAAAGCAATAAGATCATTGGCTGGCTTTTATGCAAAGGCTGGGCCAT
CTGCGCCACTGTCAGAAGCTGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAA

mRNA sequence

Show/hide mRNA sequence

GAAATGGACGAGGGAAAAAAAAAAAGCGCTGCTCTCGGCATAAAGCATAACCACAAGTTAAGAACTCGAAGTTAATTTCCATTTCCCAACTTATCCTCTTTCAACCAATT
CCTTTCTCCGTTTAGGTTTAAAACTTTTCTCTTCTCCGCATTTTGCTTCCGCCGATTCTCTTATCTGGTTCCTAACTTCGTTCGATGCCGGCACAAAGTTAAGATTTAGA
ATACAATTTACTCCATTTATGCTCACACTCACACACATGGCTTAGGTCGACAGCTTGTTTCACTTCTGTTTAATTTCTGATTGAATTCATTGATGGTGTTTGTTTCTCTC
GCAAATTCGGCATTCAATTGATGAACAAAATCTACAGCAAGCTCAATGGTTCTTAAGTTAGAAAAGTTCTCTATGGTTTGGTTTTGCAATGGGAAGATTTGTTGCATGAT
GAACCCACGATTAAACAGAATAATGCCTTATTTCCTGCAGGGGAATTGTTGGGGATGAAGCAGGGGTTTAGCGGCTCAACTTGGCTGGAGTGACTAACAAGAACGAAGAT
GACTTCTTTTATTCAAGCAAAGATCTGCCCTACAACTATTTCAACATTGAATAGAAGCTTAAGAAGTGAAAATGGCCATAAACTGCGATCCAGGTCTCAAGTTGTGCTTC
CATCTGAAGGAGTTTGTAGACGTCATTTAATGTGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGGCACCATCTTCGGCCTGGGCCGAAGAAACG
CCAAATGATAAGGAGGAAGATGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAGAGAACCAAATCAGGAAAAGTATTGCCAAAGGCTTACCTGAA
GTCTGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGTACTGCAGATGCTGCAAAAGAATCCATTCGAGACT
ATTTAAGCAATTGGTTGGGGCAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTGCTAGAGAAAGCAATAAGATCATTGGCTGGCTTTTATGCAAAGGCTGGGCCATCT
GCGCCACTGTCAGAAGCTGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAACTGATGAGCATTGGAGGTCTAGATATATGTTTTTGTTAACC
TAACATTTCACCTCCTAGATTTCGGAGGTATGCAGCTACTTTTGTTGCTATTCTCCATCTTATTCATACAAAGGAATTTATGTTCAATGGATTAAAAAAAATAGAAGAAT
CAAAACTGAGCATGCATGGCTGCTCTCGTTTCTCATTTCACTTGTATATCGGCTTCTGAACTACAATGAAATATAGCAAATTTTGTGATAGAA

Protein sequence

Show/hide protein sequence

MTSFIQAKICPTTISTLNRSLRSENGHKLRSRSQVVLPSEGVCRRHLMWNGMSLVVFLTFNNGLAPSSAWAEETPNDKEEDDNGVIGTIKSIFDPNERTKSGKVLPKAYL
KSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLSEAVKSDILNDLDKAEEFL

Lsi09G013190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome