CuGenDBv2

Gene ID	Lsi09G013520
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Genome location	chr09:21457445..21458167
RNA-Seq Expression	Lsi09G013520
Synteny	Lsi09G013520
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051287 - NAD binding (molecular function)
InterPro domains	IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H

Homology

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GenBank top hits

e value

%identity

Alignment

KAB1998239.1 hypothetical protein ES319_D12G075400v1 [Gossypium barbadense]

1.3e-07

67.31

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD
        L+   PFM DIGA TP FYIFRER+LVYDLFE ATS+RMMHN  HI+ +  D
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD

MBA0756553.1 hypothetical protein [Gossypium gossypioides]

4.4e-08

80.95

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+LVYDLFETATSMRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

TYG40260.1 hypothetical protein ES288_D12G079000v1 [Gossypium darwinii]

9.8e-08

53.33

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLK-----------LDFCKLVYVSRLVY
        L+   PFM DIGA TP FYIFRER+LVYDLFE ATS+RMMHN  HI+ +            LDFC   +++R+ Y
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLK-----------LDFCKLVYVSRLVY

TYH37998.1 hypothetical protein ES332_D12G079800v1 [Gossypium tomentosum]

4.4e-08

69.23

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD
        L+   PFM DIGA TP FYIFRER+LVYDLFE ATSMRMMHN  HI+ +  D
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD

YP_009729227.1 NADH-plastoquinone oxidoreductase subunit 7 [Allium cyathophorum]

2.6e-08

55.22

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Query:  DKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        ++LE    P  +    LI L     L+   PFM DIGA TP FYIFRER+L+YDLFE AT MRMMHN
Subjt:  DKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

TrEMBL top hits

e value

%identity

Alignment

A0A4D6Q3Y4 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

6.2e-08

78.57

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+LVYDLFETAT MRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

A0A5D2A7C6 Uncharacterized protein

4.8e-08

53.33

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLK-----------LDFCKLVYVSRLVY
        L+   PFM DIGA TP FYIFRER+LVYDLFE ATS+RMMHN  HI+ +            LDFC   +++R+ Y
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLK-----------LDFCKLVYVSRLVY

A0A5D2I6G1 Complex1_49kDa domain-containing protein

2.1e-08

69.23

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD
        L+   PFM DIGA TP FYIFRER+LVYDLFE ATSMRMMHN  HI+ +  D
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN-SHIQNLKLD

A0A6B9VXE5 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.3e-08

55.22

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Query:  DKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        ++LE    P  +    LI L     L+   PFM DIGA TP FYIFRER+L+YDLFE AT MRMMHN
Subjt:  DKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

A0A7J9D739 Complex1_49kDa domain-containing protein

2.1e-08

80.95

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+LVYDLFETATSMRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

SwissProt top hits

e value

%identity

Alignment

B1A990 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

6.4e-10

76.19

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

Q09MC0 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

6.4e-10

76.19

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

Q49KU2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

6.4e-10

76.19

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

Q4VZL2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

6.4e-10

76.19

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+LVYDLFE AT MRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

Q70XV8 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

3.8e-10

76.19

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+L+YDLFETAT MRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

Arabidopsis top hits

e value

%identity

Alignment

ATCG01110.1 NAD(P)H dehydrogenase subunit H

1.3e-10

73.81

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Query:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN
        L+   PFM DIGA TP FYIFRER+ VYDLFE AT MRMMHN
Subjt:  LVLFDPFMVDIGAHTP-FYIFRERKLVYDLFETATSMRMMHN

Sequences

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CDS sequence

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GGGTTTGTGGCTAAAGTCTCTATGATGGTAGGCCCAGTATCGCTTGTGCGTTCTCTCTCTTGCTTGTGTGTACGTACTTTAAGCAACCTTTCCATAGATAAGCTAGAGGG
CCCTGCTCCACCCTCCCACTCGGTAAAGCAATCTCTTATCTTCTTAGTGGCATGCTTGACTCTTGTCCTGTTTGACCCTTTTATGGTAGATATTGGCGCACATACTCCCT
TCTATATTTTTAGAGAAAGAAAATTAGTATATGATCTATTTGAAACAGCCACCAGTATGAGAATGATGCATAATTCTCATATACAAAATCTTAAATTGGATTTCTGCAAA
TTAGTATATGTATCACGGCTGGTCTACCTCGTGAATGGATAA

mRNA sequence

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Protein sequence

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GFVAKVSMMVGPVSLVRSLSCLCVRTLSNLSIDKLEGPAPPSHSVKQSLIFLVACLTLVLFDPFMVDIGAHTPFYIFRERKLVYDLFETATSMRMMHNSHIQNLKLDFCK
LVYVSRLVYLVNG

Lsi09G013520 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome