; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G014110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G014110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationchr09:22103670..22104023
RNA-Seq ExpressionLsi09G014110
SyntenyLsi09G014110
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026295.1 Transcription termination factor MTERF8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3370.94Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK
        MS FLCKTL+ V +  TISPYP LRC Q LH +Y+T  SDS+SFT+SYLINSCS SP   SASSASKLV+F SPEKPD VISFFKN GFS A+IS II K
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK

Query:  YPKLLLSDPNKTLWPKL
        YP++LLS+PN TL PKL
Subjt:  YPKLLLSDPNKTLWPKL

XP_022138367.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Momordica charantia]2.5e-3777.12Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTT-AVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIG
        MS FLCKTLI V + LT SPYPNLRC Q LH+SYTT AVSDS+SFT+SYL+NSCSFSP   SA SASKLV+F + +KPDSVISFFKNRGFSN  IS IIG
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTT-AVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIG

Query:  KYPKLLLSDPNKTLWPKL
        KYP+LLLSDPNKTL PKL
Subjt:  KYPKLLLSDPNKTLWPKL

XP_022930343.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucurbita moschata]2.4e-3572.65Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK
        MS FLCKTL+ V +  TISPYP LRC Q LH +Y+T  SDS+SFT+SYLINSCS SP   SASSASKLV+F SPEKPD VISFFKN GFSNA IS IIGK
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK

Query:  YPKLLLSDPNKTLWPKL
        YP++LLS+PN TL PKL
Subjt:  YPKLLLSDPNKTLWPKL

XP_022930344.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucurbita moschata]1.3e-3370.94Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK
        MS FLCKTL+ V +  TISPYP LRC Q LH +Y+T  SDS+SFT+SYLINSCS SP   SASSASKLV+F SPEKPD VISFFKN GFS A+IS II K
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK

Query:  YPKLLLSDPNKTLWPKL
        YP++LLS+PN TL PKL
Subjt:  YPKLLLSDPNKTLWPKL

XP_038906626.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Benincasa hispida]4.2e-4078.63Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK
        MS  LCKTLI  P+ LTISPYPNL C QLLHLSYTT VS SNSFTISYL+NSCS SP  ASASSASKLV FHSPE+PDSVISFFKNRGFSNA IS+I+ +
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK

Query:  YPKLLLSDPNKTLWPKL
        YP+LLLS PNK L PKL
Subjt:  YPKLLLSDPNKTLWPKL

TrEMBL top hitse value%identityAlignment
A0A0A0KFJ3 Uncharacterized protein1.8e-2875.53Show/hide
Query:  LRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL
        +RC Q LHL+Y+TA +DSNSFT++YLINSCSFSP  ASA S SK VTFHSPEKPDSVISFFKN+ F NADIS I+ K P+LLLSDPNKTL PKL
Subjt:  LRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL

A0A6J1CAW8 transcription termination factor MTERF6, chloroplastic/mitochondrial-like1.2e-3777.12Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTT-AVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIG
        MS FLCKTLI V + LT SPYPNLRC Q LH+SYTT AVSDS+SFT+SYL+NSCSFSP   SA SASKLV+F + +KPDSVISFFKNRGFSN  IS IIG
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTT-AVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIG

Query:  KYPKLLLSDPNKTLWPKL
        KYP+LLLSDPNKTL PKL
Subjt:  KYPKLLLSDPNKTLWPKL

A0A6J1ER69 transcription termination factor MTERF6, chloroplastic/mitochondrial-like6.3e-3470.94Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK
        MS FLCKTL+ V +  TISPYP LRC Q LH +Y+T  SDS+SFT+SYLINSCS SP   SASSASKLV+F SPEKPD VISFFKN GFS A+IS II K
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK

Query:  YPKLLLSDPNKTLWPKL
        YP++LLS+PN TL PKL
Subjt:  YPKLLLSDPNKTLWPKL

A0A6J1EUW1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like1.1e-3572.65Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK
        MS FLCKTL+ V +  TISPYP LRC Q LH +Y+T  SDS+SFT+SYLINSCS SP   SASSASKLV+F SPEKPD VISFFKN GFSNA IS IIGK
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK

Query:  YPKLLLSDPNKTLWPKL
        YP++LLS+PN TL PKL
Subjt:  YPKLLLSDPNKTLWPKL

A0A6J1KHT4 transcription termination factor MTERF6, chloroplastic/mitochondrial-like2.4e-3370.09Show/hide
Query:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK
        MS FLCKTL+ V +  TISPYP LRC Q LH +Y+T  SDS+SFT+SYLINSCS SP   SASSASKLV+F SPEKPD VISFFKN GFS A IS IIGK
Subjt:  MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGK

Query:  YPKLLLSDPNKTLWPKL
        YP++LLS+PN  L P+L
Subjt:  YPKLLLSDPNKTLWPKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21150.1 Mitochondrial transcription termination factor family protein4.8e-1044Show/hide
Query:  SFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL
        SFT+SYL++SC  S    SA S S+ V   S +KPDSV++ FK+ GF+N  I+++I  +P++L   P   + PKL
Subjt:  SFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL

AT1G61970.1 Mitochondrial transcription termination factor family protein1.8e-0942.11Show/hide
Query:  NSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL
        N+FT+SYL++S   +  +  A S S+ V+F     PDSV++   + GF+ + IS II  YP+LL++D  K+L PKL
Subjt:  NSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL

AT1G61970.2 Mitochondrial transcription termination factor family protein1.8e-0942.11Show/hide
Query:  NSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL
        N+FT+SYL++S   +  +  A S S+ V+F     PDSV++   + GF+ + IS II  YP+LL++D  K+L PKL
Subjt:  NSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL

AT1G62120.1 Mitochondrial transcription termination factor family protein1.8e-0943.42Show/hide
Query:  NSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL
        ++FT+SYL++S     A+  A S S  V+F +   PDSV+S  ++ GF+++ ISNII  +P+LL+ D  K+L PKL
Subjt:  NSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL

AT5G07900.1 Mitochondrial transcription termination factor family protein1.3e-1044Show/hide
Query:  SFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL
        SFT++YLI+SC  SP SA+   AS+ +   SPE+P++V++  ++ GF+ A IS+++ K P LLL++    L PKL
Subjt:  SFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPNKTLWPKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAAATTCCTTTGCAAAACCCTAATTTGCGTTCCGAATTTCCTCACGATTTCGCCATATCCAAACCTCCGCTGCTTTCAATTACTCCATTTAAGCTATACCACAGC
CGTTTCCGATTCAAATTCGTTTACAATTTCGTATCTCATAAACTCATGCTCCTTCTCCCCTGCTTCTGCTTCTGCTTCATCTGCTTCAAAGCTCGTTACCTTCCATTCTC
CTGAAAAACCAGATTCCGTCATCTCCTTCTTCAAGAATCGCGGTTTTTCCAATGCCGATATCTCCAACATTATTGGAAAATACCCTAAGCTTCTGTTATCTGATCCCAAC
AAAACCCTTTGGCCCAAACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTAAATTCCTTTGCAAAACCCTAATTTGCGTTCCGAATTTCCTCACGATTTCGCCATATCCAAACCTCCGCTGCTTTCAATTACTCCATTTAAGCTATACCACAGC
CGTTTCCGATTCAAATTCGTTTACAATTTCGTATCTCATAAACTCATGCTCCTTCTCCCCTGCTTCTGCTTCTGCTTCATCTGCTTCAAAGCTCGTTACCTTCCATTCTC
CTGAAAAACCAGATTCCGTCATCTCCTTCTTCAAGAATCGCGGTTTTTCCAATGCCGATATCTCCAACATTATTGGAAAATACCCTAAGCTTCTGTTATCTGATCCCAAC
AAAACCCTTTGGCCCAAACTCTAG
Protein sequenceShow/hide protein sequence
MSKFLCKTLICVPNFLTISPYPNLRCFQLLHLSYTTAVSDSNSFTISYLINSCSFSPASASASSASKLVTFHSPEKPDSVISFFKNRGFSNADISNIIGKYPKLLLSDPN
KTLWPKL