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Lsi09G014120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G014120
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMitochondrial transcription termination factor family protein, putative
Genome locationchr09:22104357..22104714
RNA-Seq ExpressionLsi09G014120
SyntenyLsi09G014120
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0032502 - developmental process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593956.1 Transcription termination factor MTERF8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.4e-3079.01Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW+RKLG+YKRWGLSE+ ILAAF+SHPWC TLS EKIM  MDFFVNKLGWE AA+V++P+LLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

KAG7026295.1 Transcription termination factor MTERF8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-3079.01Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW+RKLG+YKRWGLSE+ ILAAF+SHPWC TLS EKIM  MDFFVNKLGWE AA+V++P+LLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

XP_022138367.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Momordica charantia]1.5e-3082.72Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW RKL +YKRWGLSEK I+AAF+SHPWC TLS EKIM GMDFFVNKLGWE+AAVVK+PVLLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

XP_022930344.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucurbita moschata]7.4e-3079.01Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW+RKLG+YKRWGLSE+ ILAAF+SHPWC TLS EKIM  MDFFVNKLGWE AA+V++P+LLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

XP_038906626.1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Benincasa hispida]4.7e-3285.19Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        + KSTWLRK+GVYKRWGLSE+HILAAF+SHPWC  LS EKIMSGMDFFVNKLGWEAAAVVKN +LLSFSLKNR  PRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

TrEMBL top hitse value%identityAlignment
A0A6J1CAW8 transcription termination factor MTERF6, chloroplastic/mitochondrial-like7.3e-3182.72Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW RKL +YKRWGLSEK I+AAF+SHPWC TLS EKIM GMDFFVNKLGWE+AAVVK+PVLLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

A0A6J1ER69 transcription termination factor MTERF6, chloroplastic/mitochondrial-like3.6e-3079.01Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW+RKLG+YKRWGLSE+ ILAAF+SHPWC TLS EKIM  MDFFVNKLGWE AA+V++P+LLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

A0A6J1EUW1 transcription termination factor MTERF6, chloroplastic/mitochondrial-like1.0e-2977.78Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW+RKLG++KRWGLSE+ ILAAF+SHPWC TLS EKIM  MDFFVNKLGWE AA+V++P+LLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

A0A6J1KHT4 transcription termination factor MTERF6, chloroplastic/mitochondrial-like8.0e-3079.01Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M KSTW+RKLG+YKRWGLSE+ ILAAF+SHPWC TLS EKIM  MDFFV KLGWE AA+V++PVLLSFSLK R IPRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

U5FXD1 Uncharacterized protein5.2e-2160.49Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        M +STW +KL VY+RWGLS + ILAAF   PW  TLS EK+++ MD FVNKLGWE++ + KNP L+S+SL+ R+ PRASVL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21150.1 Mitochondrial transcription termination factor family protein3.1e-1036.9Show/hide
Query:  KSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCS
        +S   RK  +++ +G S++  +AA    P C T+S EKIM  +++ VN +G +A  +V  PV+LS S++ RI PR  V++ + S
Subjt:  KSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCS

AT1G61970.1 Mitochondrial transcription termination factor family protein1.1e-0735.71Show/hide
Query:  GLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCS
        G S        K  P C  LS E +    +F V K+ W   AVV NP +  +SL+ RI+PR +V+  + S
Subjt:  GLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCS

AT5G07900.1 Mitochondrial transcription termination factor family protein1.9e-1545.88Show/hide
Query:  KSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCSS
        KS W +   VY+RWG SE  I+ AFK HP C  LS  KI   M++FVN++     ++ + PV+L FSL+ RIIPR SV   + S+
Subjt:  KSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCSS

AT5G23930.1 Mitochondrial transcription termination factor family protein3.8e-0826.32Show/hide
Query:  LRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCSSS-SGKGPSAIKVLS
        ++ +  +   G ++  +L   K HP C  L+ + +    +F V  +GW    V   P++L FSL+  ++PR +V+  + S+   G+ P+   VL+
Subjt:  LRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCSSS-SGKGPSAIKVLS

AT5G64950.1 Mitochondrial transcription termination factor family protein2.2e-0832.1Show/hide
Query:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL
        + + T+ RK+ ++   G SE  I    +  P     S +K+  G +F++ ++G E  A+ K P +LS++L+ R+IPR  VL
Subjt:  MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAATCGACATGGTTACGGAAGCTTGGGGTTTATAAGAGGTGGGGTTTGTCTGAAAAACATATTCTTGCTGCATTTAAGAGCCATCCATGGTGTACGACATTATC
AGGAGAAAAAATTATGTCGGGAATGGATTTCTTTGTTAACAAATTAGGCTGGGAAGCTGCAGCCGTTGTCAAAAACCCTGTGTTGCTTTCATTTAGTTTAAAAAATAGAA
TAATTCCAAGAGCTTCAGTTCTTGCCGAAGTATGTTCATCCTCATCTGGAAAAGGTCCCTCGGCTATCAAAGTTTTATCA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAATCGACATGGTTACGGAAGCTTGGGGTTTATAAGAGGTGGGGTTTGTCTGAAAAACATATTCTTGCTGCATTTAAGAGCCATCCATGGTGTACGACATTATC
AGGAGAAAAAATTATGTCGGGAATGGATTTCTTTGTTAACAAATTAGGCTGGGAAGCTGCAGCCGTTGTCAAAAACCCTGTGTTGCTTTCATTTAGTTTAAAAAATAGAA
TAATTCCAAGAGCTTCAGTTCTTGCCGAAGTATGTTCATCCTCATCTGGAAAAGGTCCCTCGGCTATCAAAGTTTTATCA
Protein sequenceShow/hide protein sequence
MGKSTWLRKLGVYKRWGLSEKHILAAFKSHPWCTTLSGEKIMSGMDFFVNKLGWEAAAVVKNPVLLSFSLKNRIIPRASVLAEVCSSSSGKGPSAIKVLS