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Lsi09G014270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G014270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S21
Genome locationchr09:22268235..22270041
RNA-Seq ExpressionLsi09G014270
SyntenyLsi09G014270
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY98707.1 ribosomal protein S21e [Actinidia rufa]7.5e-1669.57Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAE---------EESRSSPTVENA
        SATNRLIT+KDHASVQINIGHLDENG+YTGQF+TFALCGFIRAQ  A+         +++ SS TVE A
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAE---------EESRSSPTVENA

KAG7028978.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-15100Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

KJB39009.1 hypothetical protein B456_007G299700 [Gossypium raimondii]1.7e-1586.27Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEES
        SATNRLITSKDHASVQIN+GHLDE G YTG FSTFALCGF+RAQ +AEEES
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEES

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]1.7e-15100Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

XP_008246212.1 PREDICTED: 40S ribosomal protein S21-2-like [Prunus mume]1.7e-1595.56Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQV
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCG++RAQV
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQV

TrEMBL top hitse value%identityAlignment
A0A0A0L7W3 40S ribosomal protein S218.1e-16100Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A0D2U4H9 Uncharacterized protein8.1e-1686.27Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEES
        SATNRLITSKDHASVQIN+GHLDE G YTG FSTFALCGF+RAQ +AEEES
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEES

A0A1S4DSM1 40S ribosomal protein S218.1e-16100Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A5D3CXC9 40S ribosomal protein S218.1e-16100Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

A0A7J0FLB5 40S ribosomal protein S213.6e-1669.57Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAE---------EESRSSPTVENA
        SATNRLIT+KDHASVQINIGHLDENG+YTGQF+TFALCGFIRAQ  A+         +++ SS TVE A
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAE---------EESRSSPTVENA

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S211.5e-1481.82Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q3E902 40S ribosomal protein S21-29.2e-1788.64Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q41852 40S ribosomal protein S215.6e-1479.55Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9M337 40S ribosomal protein S21-11.6e-1686.36Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

Q9SMI2 40S ribosomal protein S212.0e-1168.18Show/hide
Query:  SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA
        SATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+
Subjt:  SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e1.1e-1786.36Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT3G53890.2 Ribosomal protein S21e1.1e-1786.36Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ

AT5G27700.1 Ribosomal protein S21e6.6e-1888.64Show/hide
Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
        SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTT
CGCTCTCTGCGGTTTCATCCGTGCTCAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTT
CGCTCTCTGCGGTTTCATCCGTGCTCAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA
Protein sequenceShow/hide protein sequence
MTSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEESRSSPTVENAKFLLLEILCF