; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G014680 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G014680
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGATA transcription factor 16-like
Genome locationchr09:22667938..22668954
RNA-Seq ExpressionLsi09G014680
SyntenyLsi09G014680
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000679 - Zinc finger, GATA-type
IPR013088 - Zinc finger, NHR/GATA-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150081.1 GATA transcription factor 16 [Cucumis sativus]2.0e-6597.12Show/hide
Query:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES
        MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGES
Subjt:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES

Query:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
Subjt:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

XP_008458384.1 PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo]9.8e-6596.4Show/hide
Query:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES
        MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGES
Subjt:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES

Query:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        LKWRSMAFGRKELMQR QLGEEEQAAVLLMALSYGSVYA
Subjt:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

XP_022138518.1 GATA transcription factor 16-like [Momordica charantia]6.0e-6290.85Show/hide
Query:  MMDPIEEGSEFKDAG----KSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG
        MMDPIEEGSEFKDAG    K+SPAESEQN+KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSNR +NGGGNQAKIG
Subjt:  MMDPIEEGSEFKDAG----KSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG

Query:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        G++LKWR MAFGR+ELMQRRQLGEEEQAAVLLMALSYGSVYA
Subjt:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

XP_023548663.1 GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]3.9e-6190.14Show/hide
Query:  MMDPIEEGSEFKDAGK----SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG
        MMDPIEEGSEFKDA      SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERK+KGSSNRN+NGGGNQAK+G
Subjt:  MMDPIEEGSEFKDAGK----SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG

Query:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        G++LKWRS AFGRK+LMQRRQLGEEEQAAVLLMALSYGSVYA
Subjt:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

XP_038875288.1 GATA transcription factor 16-like [Benincasa hispida]4.4e-6596.38Show/hide
Query:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESL
        MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERK+KGSSNR+NNGGGNQ KIG ESL
Subjt:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESL

Query:  KWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        KWRSMAFGR ELMQRRQLGEEEQAAVLLMALSYGSVYA
Subjt:  KWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

TrEMBL top hitse value%identityAlignment
A0A0A0KG76 GATA-type domain-containing protein9.6e-6697.12Show/hide
Query:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES
        MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGES
Subjt:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES

Query:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
Subjt:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

A0A1S3C8C2 GATA transcription factor 16-like isoform X14.8e-6596.4Show/hide
Query:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES
        MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGES
Subjt:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES

Query:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        LKWRSMAFGRKELMQR QLGEEEQAAVLLMALSYGSVYA
Subjt:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

A0A5D3BXI1 GATA transcription factor 16-like isoform X14.8e-6596.4Show/hide
Query:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES
        MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS NRNNNGGGNQ KIGGES
Subjt:  MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSS-NRNNNGGGNQAKIGGES

Query:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        LKWRSMAFGRKELMQR QLGEEEQAAVLLMALSYGSVYA
Subjt:  LKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

A0A6J1CD73 GATA transcription factor 16-like2.9e-6290.85Show/hide
Query:  MMDPIEEGSEFKDAG----KSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG
        MMDPIEEGSEFKDAG    K+SPAESEQN+KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSNR +NGGGNQAKIG
Subjt:  MMDPIEEGSEFKDAG----KSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG

Query:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        G++LKWR MAFGR+ELMQRRQLGEEEQAAVLLMALSYGSVYA
Subjt:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

A0A6J1KXU7 GATA transcription factor 16-like5.4e-6189.44Show/hide
Query:  MMDPIEEGSEFKDAGK----SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG
        MMDP+EEGSEFKDA      SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG E ERK+KGSSNRN+NGGGNQAK+G
Subjt:  MMDPIEEGSEFKDAGK----SSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIG

Query:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
        G+SLKWRS AFGRK+LMQRRQLGEEEQAAVLLMALSYGSVYA
Subjt:  GESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

SwissProt top hitse value%identityAlignment
Q6YW48 Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 13.4e-1267.39Show/hide
Query:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGG
        + C+DC TTKTPLWR GP GPKSLCNACGIR RK RR++     GG
Subjt:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGG

Q8LC59 GATA transcription factor 232.0e-1543.7Show/hide
Query:  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG
        E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K               +  + +   S + G   + +RR L 
Subjt:  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG

Query:  EEEQAAVLLMALSYGSVYA
        EEEQAA+ L+ LS  SV A
Subjt:  EEEQAAVLLMALSYGSVYA

Q8LG10 GATA transcription factor 157.9e-2556.16Show/hide
Query:  MDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLK
        +D IEE S       SS       KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR+L+  NR    E K K S NRN           G+SLK
Subjt:  MDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLK

Query:  WRSMAFGRKELMQ--------RRQLGEEEQAAVLLMALSY-GSVYA
         R M  GR+ +MQ        R +LGEEEQAAVLLMALSY  SVYA
Subjt:  WRSMAFGRKELMQ--------RRQLGEEEQAAVLLMALSY-GSVYA

Q9FJ10 GATA transcription factor 164.2e-2664.1Show/hide
Query:  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEE
        KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K SS    +GGGN+    GESLK   M  G ++      QR++LGEE
Subjt:  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEE

Query:  EQAAVLLMALSYGSVYA
        EQAAVLLMALSYGSVYA
Subjt:  EQAAVLLMALSYGSVYA

Q9LIB5 GATA transcription factor 172.5e-1839.76Show/hide
Query:  AGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKN-----------------------------------
        +G    + S   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E ++KN                                   
Subjt:  AGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKN-----------------------------------

Query:  ------KGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
              + SS+ +N G      +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Subjt:  ------KGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

Arabidopsis top hitse value%identityAlignment
AT3G06740.1 GATA transcription factor 155.6e-2656.16Show/hide
Query:  MDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLK
        +D IEE S       SS       KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR+L+  NR    E K K S NRN           G+SLK
Subjt:  MDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLK

Query:  WRSMAFGRKELMQ--------RRQLGEEEQAAVLLMALSY-GSVYA
         R M  GR+ +MQ        R +LGEEEQAAVLLMALSY  SVYA
Subjt:  WRSMAFGRKELMQ--------RRQLGEEEQAAVLLMALSY-GSVYA

AT3G16870.1 GATA transcription factor 171.8e-1939.76Show/hide
Query:  AGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKN-----------------------------------
        +G    + S   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E ++KN                                   
Subjt:  AGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKN-----------------------------------

Query:  ------KGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA
              + SS+ +N G      +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Subjt:  ------KGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA

AT4G16141.1 GATA type zinc finger transcription factor family protein1.4e-1636.07Show/hide
Query:  EGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGL--------------------------------------
        + S+  +   SS       KKTC DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+                                      
Subjt:  EGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGL--------------------------------------

Query:  ------------NRGGEVERKNKGSSNRNNNGG-----GNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYG
                    N   +++R  + SS+ NNN       G     G +    +  A  +K L   R+LGEEE+AAVLLMALS G
Subjt:  ------------NRGGEVERKNKGSSNRNNNGG-----GNQAKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYG

AT5G26930.1 GATA transcription factor 231.4e-1643.7Show/hide
Query:  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG
        E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K               +  + +   S + G   + +RR L 
Subjt:  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKELMQRRQLG

Query:  EEEQAAVLLMALSYGSVYA
        EEEQAA+ L+ LS  SV A
Subjt:  EEEQAAVLLMALSYGSVYA

AT5G49300.1 GATA transcription factor 163.0e-2764.1Show/hide
Query:  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEE
        KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K SS    +GGGN+    GESLK   M  G ++      QR++LGEE
Subjt:  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRKEL----MQRRQLGEE

Query:  EQAAVLLMALSYGSVYA
        EQAAVLLMALSYGSVYA
Subjt:  EQAAVLLMALSYGSVYA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGACGCCGGAAAGTCTTCACCAGCGGAAAGCGAGCAGAATAAGAAGACCTGCGCTGATTGCGGTACGACGAAGAC
TCCTCTCTGGCGTGGAGGTCCAGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAG
TGGAGAGGAAAAACAAAGGAAGTAGTAACAGAAACAACAATGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAA
GAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA
mRNA sequenceShow/hide mRNA sequence
AAACCGTGTCGGTTCAATTCTTCATCATCATCTTCTTCTTCTTCTTCTCTCTTTCTTCGTGCCACTGATCGCTCTCACTCTGTTCTTTCTCTCTCTGCATGTCGGTTTCA
TCTTTTTCGTCTTCCAGATTTCGACTATCTTCTTTTTCACTTCATCGCATTTTCTGTTCCAGTATTGATTGTTGAGTGGCTTTGTTCGTCTGATCTTCTGTTCAAGCTTT
CCTTTACTTCCTTCGAATTCGAGTTTGAGTTCTTTTTAGTGCATTTCTCCTTTCTATTCCTTCGATTTTATGACTCCAATTCGTCTCCACCGCTTTCAATCGTCAATACC
CTCTTTCCGCTTCGATTTTCGGTGCTTATTTTCTCGGTTCGTTTCAGATCTCTGAGATTTCTACTGAAAAATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGACG
CCGGAAAGTCTTCACCAGCGGAAAGCGAGCAGAATAAGAAGACCTGCGCTGATTGCGGTACGACGAAGACTCCTCTCTGGCGTGGAGGTCCAGCTGGCCCTAAGTCTCTT
TGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGCTTCTAGGTTTAAACAGAGGAGGGGAAGTGGAGAGGAAAAACAAAGGAAGTAGTAACAGAAACAACAA
TGGCGGTGGAAATCAGGCAAAAATTGGGGGAGAGAGCTTGAAATGGAGATCAATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAACAAG
CTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA
Protein sequenceShow/hide protein sequence
MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNRNNNGGGNQAKIGGESLKWRSMAFGRK
ELMQRRQLGEEEQAAVLLMALSYGSVYA