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Lsi09G014690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G014690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger protein 6-like
Genome locationchr09:22692090..22692488
RNA-Seq ExpressionLsi09G014690
SyntenyLsi09G014690
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0010090 - trichome morphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044299 - Zinc finger protein GIS3/ZFP5/ZFP6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013666.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-3868.7Show/hide
Query:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG
        MKLFG+S+TAS     +LGAPC+NH KRF+CQFCGREFANSQALGGHQNAHKRERQLAKQLLP       RNF   T   PPPSA      GR+PP  Y 
Subjt:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG

Query:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS
        M ++APP VGGG +NGE+NGVDLHLSLAPSS
Subjt:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS

KGN47401.1 hypothetical protein Csa_022997 [Cucumis sativus]1.1e-4979.41Show/hide
Query:  MMKLFGFSLTASTTD---RANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP
        MMKLFGFS+TASTT      NLGAPC NHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLP QP+KHSRNFL ST   PP S   IWSAGRAPP
Subjt:  MMKLFGFSLTASTTD---RANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP

Query:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS
         +YG+ +QA P +VGGG VN ESNGVDLHLSLAPSS
Subjt:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS

XP_004150094.1 zinc finger protein 6 [Cucumis sativus]4.2e-4979.26Show/hide
Query:  MKLFGFSLTASTTD---RANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPL
        MKLFGFS+TASTT      NLGAPC NHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLP QP+KHSRNFL ST   PP S   IWSAGRAPP 
Subjt:  MKLFGFSLTASTTD---RANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPL

Query:  EYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS
        +YG+ +QA P +VGGG VN ESNGVDLHLSLAPSS
Subjt:  EYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS

XP_008458383.1 PREDICTED: zinc finger protein 6-like [Cucumis melo]9.8e-4675Show/hide
Query:  MMKLFGFSLTASTT---DRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP
        MMKLFGFS+TASTT       LGAPC NH+KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLP  P+KHSRNF  ST    PPS   IWSAGRAPP
Subjt:  MMKLFGFSLTASTT---DRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP

Query:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS
         + G+ +QA P +VGGG+V+ ESNGVDLHLSLAPSS
Subjt:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS

XP_023548316.1 zinc finger protein 6-like [Cucurbita pepo subsp. pepo]2.0e-3869.47Show/hide
Query:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG
        MKLFG+S+TAS     +LGAPC+NH KRF+CQFCGREFANSQALGGHQNAHKRERQLAKQLLP       RNF   T   PPPSA     AGR+PP  Y 
Subjt:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG

Query:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS
        M ++APP VGGG +NGE+NGVDLHLSLAPSS
Subjt:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS

TrEMBL top hitse value%identityAlignment
A0A0A0KI02 C2H2-type domain-containing protein5.4e-5079.41Show/hide
Query:  MMKLFGFSLTASTTD---RANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP
        MMKLFGFS+TASTT      NLGAPC NHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLP QP+KHSRNFL ST   PP S   IWSAGRAPP
Subjt:  MMKLFGFSLTASTTD---RANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP

Query:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS
         +YG+ +QA P +VGGG VN ESNGVDLHLSLAPSS
Subjt:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS

A0A1S3C7Q6 zinc finger protein 6-like4.7e-4675Show/hide
Query:  MMKLFGFSLTASTT---DRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP
        MMKLFGFS+TASTT       LGAPC NH+KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLP  P+KHSRNF  ST    PPS   IWSAGRAPP
Subjt:  MMKLFGFSLTASTT---DRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP

Query:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS
         + G+ +QA P +VGGG+V+ ESNGVDLHLSLAPSS
Subjt:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS

A0A5D3BTX6 Zinc finger protein 6-like4.7e-4675Show/hide
Query:  MMKLFGFSLTASTT---DRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP
        MMKLFGFS+TASTT       LGAPC NH+KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLP  P+KHSRNF  ST    PPS   IWSAGRAPP
Subjt:  MMKLFGFSLTASTT---DRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPP

Query:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS
         + G+ +QA P +VGGG+V+ ESNGVDLHLSLAPSS
Subjt:  LEYGMSMQA-PPLVGGGNVNGESNGVDLHLSLAPSS

A0A6J1H7Y0 zinc finger protein 6-like3.6e-3868.7Show/hide
Query:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG
        MKLFG+S+ AS     +LGAPC+NH KRF+CQFCGREFANSQALGGHQNAHKRERQLAKQLLP       RNF   T   PPPSA     AGR+PP  Y 
Subjt:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG

Query:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS
        M ++APP VGGG +NGE+NGVDLHLSLAPSS
Subjt:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS

A0A6J1KZQ7 zinc finger protein 6-like3.6e-3869.47Show/hide
Query:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG
        MKLFG+S+TAS     +LGAPC+NH KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLP       RNF   T   PPPSA     AG +PP  Y 
Subjt:  MKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYG

Query:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS
        M ++APP VGGG +NGE+NGVDLHLSLAPSS
Subjt:  MSMQAPPLVGGGNVNGESNGVDLHLSLAPSS

SwissProt top hitse value%identityAlignment
P93751 Zinc finger protein 89.0e-1040.18Show/hide
Query:  SNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ------LLPFQP--SKHSRNFLNSTSSLPPPS-----AAVIWSAGRAPPLEYGMSMQAPPLV
        +N+N+RFEC +C R F  SQALGGHQNAHKRERQ AK+      L   QP    H   FLN+      PS      +     G   P  Y  +  APP  
Subjt:  SNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ------LLPFQP--SKHSRNFLNSTSSLPPPS-----AAVIWSAGRAPPLEYGMSMQAPPLV

Query:  GGGNVNGESNGV
            +NG   G+
Subjt:  GGGNVNGESNGV

Q39264 Zinc finger protein 51.2e-0944.44Show/hide
Query:  MKLFGFSLTAS--TTDRANLGAPCSNHN-------KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLP
        +KLFGF L +   T +     +  S+ N       KR ECQ+CG+EFANSQALGGHQNAHK+ER L K+ L  Q  + S  +  +    P
Subjt:  MKLFGFSLTAS--TTDRANLGAPCSNHN-------KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLP

Q39265 Zinc finger protein 62.8e-1136.09Show/hide
Query:  MKLFGFSLTAST-----TDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQL-------LP----FQPSKHSRNFLNSTSSLP---
        +KLFG +L  +T     +     G+   + ++++ECQ+C REFANSQALGGHQNAHK+ERQL K+        LP    F P  H+   L++ + LP   
Subjt:  MKLFGFSLTAST-----TDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQL-------LP----FQPSKHSRNFLNSTSSLP---

Query:  ----PPSAAVIWSAGRAPPLEYGMSMQAPPLVG
            PP   ++  +  +    YG  M +   VG
Subjt:  ----PPSAAVIWSAGRAPPLEYGMSMQAPPLVG

Q84WI0 Zinc finger protein GIS1.2e-0975.68Show/hide
Query:  NHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ
        +HN+RFEC +C R F  SQALGGHQNAHKRERQLAK+
Subjt:  NHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ

Q9C9H1 Zinc finger protein GIS33.8e-0841.18Show/hide
Query:  KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYGMSMQAPPLVGG
        +++ECQ+C REF NSQALGGHQNAHK+ERQ  K+         + NF N+ S+       ++  +  APP     S   P  +GG
Subjt:  KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYGMSMQAPPLVGG

Arabidopsis top hitse value%identityAlignment
AT1G10480.1 zinc finger protein 58.3e-1144.44Show/hide
Query:  MKLFGFSLTAS--TTDRANLGAPCSNHN-------KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLP
        +KLFGF L +   T +     +  S+ N       KR ECQ+CG+EFANSQALGGHQNAHK+ER L K+ L  Q  + S  +  +    P
Subjt:  MKLFGFSLTAS--TTDRANLGAPCSNHN-------KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLP

AT1G67030.1 zinc finger protein 62.0e-1236.09Show/hide
Query:  MKLFGFSLTAST-----TDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQL-------LP----FQPSKHSRNFLNSTSSLP---
        +KLFG +L  +T     +     G+   + ++++ECQ+C REFANSQALGGHQNAHK+ERQL K+        LP    F P  H+   L++ + LP   
Subjt:  MKLFGFSLTAST-----TDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQL-------LP----FQPSKHSRNFLNSTSSLP---

Query:  ----PPSAAVIWSAGRAPPLEYGMSMQAPPLVG
            PP   ++  +  +    YG  M +   VG
Subjt:  ----PPSAAVIWSAGRAPPLEYGMSMQAPPLVG

AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein2.7e-0941.18Show/hide
Query:  KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYGMSMQAPPLVGG
        +++ECQ+C REF NSQALGGHQNAHK+ERQ  K+         + NF N+ S+       ++  +  APP     S   P  +GG
Subjt:  KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYGMSMQAPPLVGG

AT2G41940.1 zinc finger protein 86.4e-1140.18Show/hide
Query:  SNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ------LLPFQP--SKHSRNFLNSTSSLPPPS-----AAVIWSAGRAPPLEYGMSMQAPPLV
        +N+N+RFEC +C R F  SQALGGHQNAHKRERQ AK+      L   QP    H   FLN+      PS      +     G   P  Y  +  APP  
Subjt:  SNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ------LLPFQP--SKHSRNFLNSTSSLPPPS-----AAVIWSAGRAPPLEYGMSMQAPPLV

Query:  GGGNVNGESNGV
            +NG   G+
Subjt:  GGGNVNGESNGV

AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein8.3e-1175.68Show/hide
Query:  NHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ
        +HN+RFEC +C R F  SQALGGHQNAHKRERQLAK+
Subjt:  NHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGCTATTTGGTTTTTCATTGACGGCTAGTACTACTGATAGAGCGAACTTGGGTGCGCCATGTTCGAACCACAACAAGAGATTCGAGTGCCAATTCTGCGGCCG
TGAGTTCGCCAATTCTCAAGCCCTCGGCGGCCACCAGAACGCTCACAAGCGCGAGCGCCAGCTCGCTAAACAACTACTTCCTTTCCAACCCTCTAAACACTCTCGTAATT
TTTTAAATTCTACATCGTCTTTGCCGCCGCCCTCCGCTGCCGTGATCTGGTCCGCTGGAAGAGCTCCGCCGCTGGAATATGGGATGTCGATGCAAGCACCGCCGTTGGTT
GGCGGTGGCAATGTGAATGGAGAAAGTAATGGCGTTGATCTCCACCTCAGTCTCGCACCTTCCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGCTATTTGGTTTTTCATTGACGGCTAGTACTACTGATAGAGCGAACTTGGGTGCGCCATGTTCGAACCACAACAAGAGATTCGAGTGCCAATTCTGCGGCCG
TGAGTTCGCCAATTCTCAAGCCCTCGGCGGCCACCAGAACGCTCACAAGCGCGAGCGCCAGCTCGCTAAACAACTACTTCCTTTCCAACCCTCTAAACACTCTCGTAATT
TTTTAAATTCTACATCGTCTTTGCCGCCGCCCTCCGCTGCCGTGATCTGGTCCGCTGGAAGAGCTCCGCCGCTGGAATATGGGATGTCGATGCAAGCACCGCCGTTGGTT
GGCGGTGGCAATGTGAATGGAGAAAGTAATGGCGTTGATCTCCACCTCAGTCTCGCACCTTCCTCTTAA
Protein sequenceShow/hide protein sequence
MMKLFGFSLTASTTDRANLGAPCSNHNKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLLPFQPSKHSRNFLNSTSSLPPPSAAVIWSAGRAPPLEYGMSMQAPPLV
GGGNVNGESNGVDLHLSLAPSS