; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G015390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G015390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:23516382..23517329
RNA-Seq ExpressionLsi09G015390
SyntenyLsi09G015390
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-4861.88Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDGHDI---------------
        MFLV+L+QFEPL+D+TSLL QIS DADV+FT  ML +I S+ SP FVATLQ+S RLF N+SVDH  SSKVSLE FH+AMLDG                  
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDGHDI---------------

Query:  ----------PPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
                  PPLH EL LSPPQAE+LGQVEYG FFTV SK LR+IIKELP+FH D V V  T +RVKFSI SKEI +TKE
Subjt:  ----------PPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE

TYK02993.1 uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa]1.9e-7087.97Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG--HDIPPLHHELTLSPPQ
        MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NFSVDHNKSSKVSL+PFH+AMLDG  HD+PPLHHEL LSPPQ
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG--HDIPPLHHELTLSPPQ

Query:  AENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
        AENLGQVEYGNFFTVTS+ELRRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTKE
Subjt:  AENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]8.8e-6876.8Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------
        MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NFSVDHNKSSKVSL+PFH+AMLDG                  
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------

Query:  -------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
               HD+PPLHHEL LSPPQAENLGQVEYGNFFTVTS+ELRRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTKE
Subjt:  -------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]6.1e-4553.89Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------
        MFLVRL+ F+PL D+TS LAQI+ +AD+KFTPL   II SN SP FVA LQ++   FIN+ VD++ +S++SLE FH+A+LDG                  
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------

Query:  ------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
                 P +HHEL+L+P Q E+LG+V+Y  FF++ SK+LRR+I+ LPIFH DS+CVT TGS+VKFSI SKEIVLTKE
Subjt:  ------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE

XP_038875055.1 uncharacterized protein LOC120067580 [Benincasa hispida]1.8e-4158.24Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------
        MFLV+L  FEPL+D+TS LAQISN ADVKFTPL   +I    SP FVATLQLS++ F N+SVDH  +SKV LE FH+A+LDG                  
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------

Query:  -------HDIPPLHHELTLSPPQ-AENL--GQVEYGNFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSKEIVL
                +IPPLHHELT SPPQ A+N   GQ+E G FF V S+ LRRIIKELPIF  DS VCV VT S++KFSI SKEIVL
Subjt:  -------HDIPPLHHELTLSPPQ-AENL--GQVEYGNFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSKEIVL

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980104.2e-6876.8Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------
        MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NFSVDHNKSSKVSL+PFH+AMLDG                  
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------

Query:  -------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
               HD+PPLHHEL LSPPQAENLGQVEYGNFFTVTS+ELRRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTKE
Subjt:  -------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE

A0A1S4E4N8 uncharacterized protein LOC1035022633.0e-4553.89Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------
        MFLVRL+ F+PL D+TS LAQI+ +AD+KFTPL   II SN SP FVA LQ++   FIN+ VD++ +S++SLE FH+A+LDG                  
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG------------------

Query:  ------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
                 P +HHEL+L+P Q E+LG+V+Y  FF++ SK+LRR+I+ LPIFH DS+CVT TGS+VKFSI SKEIVLTKE
Subjt:  ------HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE

A0A5D3BTK3 Uncharacterized protein9.1e-7187.97Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG--HDIPPLHHELTLSPPQ
        MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NFSVDHNKSSKVSL+PFH+AMLDG  HD+PPLHHEL LSPPQ
Subjt:  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG--HDIPPLHHELTLSPPQ

Query:  AENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
        AENLGQVEYGNFFTVTS+ELRRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTKE
Subjt:  AENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE

A0A5D3BV00 Uncharacterized protein7.5e-4155.61Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISND-ADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDGHD---------------
        MFLV+L +FEPL+DSTS LAQ SND AD+KF P  L +IV N SP F ATLQLS R F N+SVDH  SSKVSLE FH+AMLDG D               
Subjt:  MFLVRLEQFEPLIDSTSLLAQISND-ADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDGHD---------------

Query:  ----------IPPLHHELTLSPPQAENL----GQVEYGNFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSKEIVLTKE
                  I P HHELTLSPPQ+E++     +++   F  V SK LRR+IKELPIFH DS +CV+VT S++KFSI SK IVL++E
Subjt:  ----------IPPLHHELTLSPPQAENL----GQVEYGNFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSKEIVLTKE

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein2.7e-3855.38Show/hide
Query:  MFLVRLEQFEPLIDSTSLLAQISND-ADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG-----------------
        MFLV+L+ F+PL+D+TS LAQIS D AD+KFTP    II S+ SP F+ATLQLS + F  FSVD++ SSKVSLE FH+A+LDG                 
Subjt:  MFLVRLEQFEPLIDSTSLLAQISND-ADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDG-----------------

Query:  --------HDIPPLHHELTLSPPQAEN--LGQVEYG--NFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSKEIVLTK
                 +I PLHHELTLSPPQAE+  +GQ E     +F V SK LRRIIK+LPIF  DS + V VT SRVKFSI SKEI+LT+
Subjt:  --------HDIPPLHHELTLSPPQAEN--LGQVEYG--NFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSKEIVLTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATACTTTGGTAATTCTCTCCTTCCCCACCATGTTCTTAGTTAGGCTTGAGCAATTTGAACCTCTTATTGATTCAACCTCCTTGTTGGCTCAAATTTCCAACGATGCCGA
CGTGAAATTCACACCATTGATGCTCATGATAATCGTCTCGAACCATTCCCCTCACTTCGTCGCAACGCTGCAATTATCCCGACGATTGTTCATCAACTTCTCCGTCGATC
ATAATAAAAGTTCCAAAGTTTCCCTTGAACCCTTCCATGAGGCTATGTTGGATGGCCATGATATTCCACCGTTGCATCATGAATTGACATTGTCACCTCCCCAAGCAGAG
AATTTAGGGCAAGTTGAATATGGAAATTTTTTCACAGTTACTTCTAAAGAGTTAAGAAGGATTATAAAAGAATTACCTATCTTCCATCAAGATTCAGTTTGTGTTACGGT
AACGGGTTCTCGAGTCAAGTTCTCTATTCAATCTAAGGAGATTGTTCTTACGAAAGAG
mRNA sequenceShow/hide mRNA sequence
TATACTTTGGTAATTCTCTCCTTCCCCACCATGTTCTTAGTTAGGCTTGAGCAATTTGAACCTCTTATTGATTCAACCTCCTTGTTGGCTCAAATTTCCAACGATGCCGA
CGTGAAATTCACACCATTGATGCTCATGATAATCGTCTCGAACCATTCCCCTCACTTCGTCGCAACGCTGCAATTATCCCGACGATTGTTCATCAACTTCTCCGTCGATC
ATAATAAAAGTTCCAAAGTTTCCCTTGAACCCTTCCATGAGGCTATGTTGGATGGCCATGATATTCCACCGTTGCATCATGAATTGACATTGTCACCTCCCCAAGCAGAG
AATTTAGGGCAAGTTGAATATGGAAATTTTTTCACAGTTACTTCTAAAGAGTTAAGAAGGATTATAAAAGAATTACCTATCTTCCATCAAGATTCAGTTTGTGTTACGGT
AACGGGTTCTCGAGTCAAGTTCTCTATTCAATCTAAGGAGATTGTTCTTACGAAAGAG
Protein sequenceShow/hide protein sequence
YTLVILSFPTMFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDGHDIPPLHHELTLSPPQAE
NLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE