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Lsi09G015400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G015400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:23523382..23523669
RNA-Seq ExpressionLsi09G015400
SyntenyLsi09G015400
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-2772.92Show/hide
Query:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Subjt:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

KAE8646596.1 hypothetical protein Csa_004903, partial [Cucumis sativus]1.5e-2772.92Show/hide
Query:  MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Subjt:  MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]5.6e-2770.53Show/hide
Query:  MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS +   NFSV+ + SSKVSL+ FHDA+LDGGSF SMTIH LD  NQ++LRF T S
Subjt:  MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]1.5e-2772.92Show/hide
Query:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Subjt:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]1.5e-2772.92Show/hide
Query:  MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Subjt:  MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein7.1e-2872.92Show/hide
Query:  MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATS  AQIS  DA VKFTP K +II S+RSPRF ATLQLS Q+  +FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Subjt:  MDATSLLAQIS-KDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

A0A1S3C8J1 uncharacterized protein LOC1034980102.7e-2770.53Show/hide
Query:  MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATSLLAQ++KDA VKFTPL L IIVSNRSP+F ATLQLS +   NFSV+ + SSKVSL+ FHDA+LDGGSF SMTIH LD  NQ++LRF T S
Subjt:  MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

A0A1S3CL88 uncharacterized protein LOC1035022507.1e-2872.92Show/hide
Query:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Subjt:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

A0A5D3BV00 Uncharacterized protein2.5e-2566.67Show/hide
Query:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +D+TS LAQ S D A +KF P KL++IV NRSPRFFATLQLS ++  N+SV+  HSSKVSLESFHDA+LDGG F SM+IH LDK NQ+ LRF T S
Subjt:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein7.1e-2872.92Show/hide
Query:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS
        +DATS LAQIS D A +KFTP K +II S+RSPRF ATLQLS Q+   FSV+ DHSSKVSLESFHDA+LDGGSF SMTIH LDK NQ+ILRF T S
Subjt:  MDATSLLAQISKD-AGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAAC
GCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTT
GTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGCAACCTCCTTACTGGCTCAAATTTCGAAGGATGCCGGTGTGAAATTCACTCCGTTGAAGCTCTACATAATCGTCTCGAACCGTTCCCCTCGCTTCTTCGCAAC
GCTGCAATTGTCGGATCAATTCTTGCGCAACTTTTCCGTCAATCGTGATCATAGTTCCAAGGTTTCCCTTGAATCCTTCCATGATGCTTTGTTGGATGGCGGAAGCTTTT
GTTCAATGACTATCCATTCTTTGGACAAAATAAACCAACTGATCCTTAGATTTGGGACTTCAAGTTAG
Protein sequenceShow/hide protein sequence
MDATSLLAQISKDAGVKFTPLKLYIIVSNRSPRFFATLQLSDQFLRNFSVNRDHSSKVSLESFHDALLDGGSFCSMTIHSLDKINQLILRFGTSS