; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G015420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G015420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:23536145..23536810
RNA-Seq ExpressionLsi09G015420
SyntenyLsi09G015420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047513.1 hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]1.2e-1244.92Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI
        D  + S +SL   HNAL+ G+ F+++ + + E  N+I L FE S   + L L+ ELT ++PMEDWSPG +  + K F I SE+F  II  FS  NE   I
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI

Query:  LITSTGSQVKFSVLQFQD
        LIT+ GS+V FSV  F +
Subjt:  LITSTGSQVKFSVLQFQD

TYK26483.1 hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]1.2e-1244.92Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI
        D  + S +SL   HNAL+ G+ F+++ + + E  N+I L FE S   + L L+ ELT ++PMEDWSPG +  + K F I SE+F  II  FS  NE   I
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI

Query:  LITSTGSQVKFSVLQFQD
        LIT+ GS+V FSV  F +
Subjt:  LITSTGSQVKFSVLQFQD

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]1.1e-1342.5Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKILIT
        D   +S +SLQ FH+A+L G  FSSMT+HLL+  N+++LRFET  H  P  LHHEL + P +  + GQ+     F + S   +RII    + ++  + +T
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKILIT

Query:  STGSQVKFSVLQFQDIIFSQ
         TGSQVKFS+ Q ++II ++
Subjt:  STGSQVKFSVLQFQDIIFSQ

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]8.1e-1442.86Show/hide
Query:  RFDDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKIL
        + D+ + S ISL+SFH+ALL G    SMT+HLL  + +++LRFE+S H AP  +HHEL++ P ++   G+++  K F I S+  +R+I    + +   I 
Subjt:  RFDDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKIL

Query:  ITSTGSQVKFSV
        +T+TGSQVKFS+
Subjt:  ITSTGSQVKFSV

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]3.1e-1347.46Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQIN--PKTFCIGSEMFKRIITRFSVNNEVK-I
        D  + S ISL SF++ALL+ Q F+++ +HL E  N+ILL FE S   + L L+ ELT ++PMEDWS  Q+N   K F I S++F  II  FS   E   I
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQIN--PKTFCIGSEMFKRIITRFSVNNEVK-I

Query:  LITSTGSQVKFSVLQFQD
        LI S GS+V FS+L F +
Subjt:  LITSTGSQVKFSVLQFQD

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980105.1e-1442.5Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKILIT
        D   +S +SLQ FH+A+L G  FSSMT+HLL+  N+++LRFET  H  P  LHHEL + P +  + GQ+     F + S   +RII    + ++  + +T
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKILIT

Query:  STGSQVKFSVLQFQDIIFSQ
         TGSQVKFS+ Q ++II ++
Subjt:  STGSQVKFSVLQFQDIIFSQ

A0A1S4E4N8 uncharacterized protein LOC1035022633.9e-1442.86Show/hide
Query:  RFDDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKIL
        + D+ + S ISL+SFH+ALL G    SMT+HLL  + +++LRFE+S H AP  +HHEL++ P ++   G+++  K F I S+  +R+I    + +   I 
Subjt:  RFDDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQIN-PKTFCIGSEMFKRIITRFSVNNEVKIL

Query:  ITSTGSQVKFSV
        +T+TGSQVKFS+
Subjt:  ITSTGSQVKFSV

A0A5A7TVD7 Uncharacterized protein5.6e-1344.92Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI
        D  + S +SL   HNAL+ G+ F+++ + + E  N+I L FE S   + L L+ ELT ++PMEDWSPG +  + K F I SE+F  II  FS  NE   I
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI

Query:  LITSTGSQVKFSVLQFQD
        LIT+ GS+V FSV  F +
Subjt:  LITSTGSQVKFSVLQFQD

A0A5D3DSC2 Uncharacterized protein5.6e-1344.92Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI
        D  + S +SL   HNAL+ G+ F+++ + + E  N+I L FE S   + L L+ ELT ++PMEDWSPG +  + K F I SE+F  II  FS  NE   I
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELT-ILPMEDWSPGQI--NPKTFCIGSEMFKRIITRFSVNNEV-KI

Query:  LITSTGSQVKFSVLQFQD
        LIT+ GS+V FSV  F +
Subjt:  LITSTGSQVKFSVLQFQD

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein6.9e-1140.65Show/hide
Query:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKTFCIGSEMFKRIITRFSV-NNE
        D+ ++S +SL+SFH+A+L G  F+SMT+HLL+  N+++LRF+T S  + P  LHHELT+ P   ED   GQ      K F + S+  +RII    +  N+
Subjt:  DDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKTFCIGSEMFKRIITRFSV-NNE

Query:  VKILITSTGSQVKFSVLQFQDII
          I +  T S+VKFS+   + I+
Subjt:  VKILITSTGSQVKFSVLQFQDII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGCCTGAAATTCTCGCCGTCGACGTTCTCGATAATTACTTGGTTCCCGTCCCCTCCCTTCGTTTTGACGATACTTATGCCTCAACCATTTCCCTCCAATCCTTCCACAA
TGCTTTGTTGCAAGGCCAAAGGTTTTCTTCAATGACCCTCCATCTTCTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGACTTCAAGGCATTTGGCACCATTATTAT
TGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTGGCCAAATAAATCCAAAAACTTTCTGTATTGGTTCAGAAATGTTTAAACGTATTATTACAAGATTT
TCTGTCAATAATGAAGTTAAAATTTTGATTACTTCGACGGGTTCACAAGTCAAATTCTCTGTCTTACAATTTCAGGACATAATTTTTAGCCAA
mRNA sequenceShow/hide mRNA sequence
CTGCCTGAAATTCTCGCCGTCGACGTTCTCGATAATTACTTGGTTCCCGTCCCCTCCCTTCGTTTTGACGATACTTATGCCTCAACCATTTCCCTCCAATCCTTCCACAA
TGCTTTGTTGCAAGGCCAAAGGTTTTCTTCAATGACCCTCCATCTTCTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGACTTCAAGGCATTTGGCACCATTATTAT
TGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTGGCCAAATAAATCCAAAAACTTTCTGTATTGGTTCAGAAATGTTTAAACGTATTATTACAAGATTT
TCTGTCAATAATGAAGTTAAAATTTTGATTACTTCGACGGGTTCACAAGTCAAATTCTCTGTCTTACAATTTCAGGACATAATTTTTAGCCAA
Protein sequenceShow/hide protein sequence
LPEILAVDVLDNYLVPVPSLRFDDTYASTISLQSFHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHLAPLLLHHELTILPMEDWSPGQINPKTFCIGSEMFKRIITRF
SVNNEVKILITSTGSQVKFSVLQFQDIIFSQ