; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G015440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G015440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:23558005..23559620
RNA-Seq ExpressionLsi09G015440
SyntenyLsi09G015440
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047513.1 hypothetical protein E6C27_scaffold498G001420 [Cucumis melo var. makuwa]3.8e-2549.32Show/hide
Query:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS
        MM +P   F EYSVDRNH S +SL  LHNA+++ E+F +++ + ++E++N I L FE S+       PS LPL+ EL F +PMEDWS G V   G KI S
Subjt:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS

Query:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEV
        +E+++++DII  FS +NEAD+ILIT  GS+ TFSV PF  E  +T+E+
Subjt:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEV

KGN45637.1 hypothetical protein Csa_005027 [Cucumis sativus]1.5e-3249.41Show/hide
Query:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT
        MFSI +D LD  LD I+ FT+I+ND+ICLK + S FSIIARY  P FFAM+ IP   F EY V R+H  ++SL  LH A+   +++ SS+ + LQE++N 
Subjt:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT

Query:  IHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADS
        I L FEPS H       S +P+  ++RF +PMEDWS GE+     K  S+E+D++ DIITTF  YNE D+
Subjt:  IHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADS

KGN61523.1 hypothetical protein Csa_006491 [Cucumis sativus]7.7e-2643.07Show/hide
Query:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT
        MFSI VD LD FLD  + FTE +NDEICLK +PS FS+IARY CP FFAM+ +P   F EYSVDRNH S+ISL+   NA+LE +S+ SSM++ L+E +NT
Subjt:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT

Query:  IHLIFEPSNHSTLLFWPSALPLHHELRFLPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEVCFVN
        I   FEP                                                             SILIT  GSQ TFS VP + EI + +EVCFV 
Subjt:  IHLIFEPSNHSTLLFWPSALPLHHELRFLPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEVCFVN

Query:  FV
        FV
Subjt:  FV

TYK26483.1 hypothetical protein E5676_scaffold313G00490 [Cucumis melo var. makuwa]6.5e-2549.66Show/hide
Query:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS
        MM +P   F EYSVDRNH S +SL  LHNA+++ E+F +++ + ++E++N I L FE S+       PS LPL+ EL F +PMEDWS G V   G KI S
Subjt:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS

Query:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQE
        +E+++++DII  FS +NEAD+ILIT  GS+ TFSV PF  E  +T+E
Subjt:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQE

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]8.8e-3848.47Show/hide
Query:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT
        MFSI +D +D FLD    F E+ +DEICLK  PS  SII RY CP+FF  M +P   F EYSVDRNH S+ISL   ++A+LE ++F +++ + LQE +N 
Subjt:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT

Query:  IHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQE
        I L FEPS+       PS LPL+ EL F +PMEDWS  +V   G K+ S+E+ ++ DII  FS + EA++ILI   GS+ +FS++PF  E  +T+E
Subjt:  IHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQE

TrEMBL top hitse value%identityAlignment
A0A0A0KB76 Uncharacterized protein7.0e-3349.41Show/hide
Query:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT
        MFSI +D LD  LD I+ FT+I+ND+ICLK + S FSIIARY  P FFAM+ IP   F EY V R+H  ++SL  LH A+   +++ SS+ + LQE++N 
Subjt:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT

Query:  IHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADS
        I L FEPS H       S +P+  ++RF +PMEDWS GE+     K  S+E+D++ DIITTF  YNE D+
Subjt:  IHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADS

A0A0A0LIE0 Uncharacterized protein3.7e-2643.07Show/hide
Query:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT
        MFSI VD LD FLD  + FTE +NDEICLK +PS FS+IARY CP FFAM+ +P   F EYSVDRNH S+ISL+   NA+LE +S+ SSM++ L+E +NT
Subjt:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT

Query:  IHLIFEPSNHSTLLFWPSALPLHHELRFLPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEVCFVN
        I   FEP                                                             SILIT  GSQ TFS VP + EI + +EVCFV 
Subjt:  IHLIFEPSNHSTLLFWPSALPLHHELRFLPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEVCFVN

Query:  FV
        FV
Subjt:  FV

A0A5A7TVD7 Uncharacterized protein1.9e-2549.32Show/hide
Query:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS
        MM +P   F EYSVDRNH S +SL  LHNA+++ E+F +++ + ++E++N I L FE S+       PS LPL+ EL F +PMEDWS G V   G KI S
Subjt:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS

Query:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEV
        +E+++++DII  FS +NEAD+ILIT  GS+ TFSV PF  E  +T+E+
Subjt:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEV

A0A5D3DSC2 Uncharacterized protein3.2e-2549.66Show/hide
Query:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS
        MM +P   F EYSVDRNH S +SL  LHNA+++ E+F +++ + ++E++N I L FE S+       PS LPL+ EL F +PMEDWS G V   G KI S
Subjt:  MMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNHSTLLFWPSALPLHHELRF-LPMEDWSLGEVALCGDKILS

Query:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQE
        +E+++++DII  FS +NEAD+ILIT  GS+ TFSV PF  E  +T+E
Subjt:  VEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQE

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein1.9e-1432.99Show/hide
Query:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT
        MF + +   D  LD  +   +I  D   LK TPS+F IIA +  P F A + + P +F  +SVD +H+SK+SL+  H+A+L+  SF +SMT+ L ++ N 
Subjt:  MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENT

Query:  IHLIFE-PSNHSTLLFWPSALPLHHELRFLP--MEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQ
        + L F+ PS+           PLHHEL   P   ED  +G+  L   K   V++     II    ++     I + +  S+  FS+     EI +T+
Subjt:  IHLIFE-PSNHSTLLFWPSALPLHHELRFLP--MEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTATCAACGTTGACGCATTAGATATTTTCTTAGATTTAATCACCCAATTCACTGAAATTATGAACGATGAAATCTGCCTGAAAATCACACCGTCGGAGTTCTC
GATAATCGCTCGGTACGGGTGCCCTCTTTTCTTTGCAATGATGGTTATACCGCCTGTATTCTTCCCCGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTCC
AGTACTTGCACAATGCTGTCTTGGAAGCTGAAAGCTTTTCTTCTTCAATGACCATGCAACTTCAAGAACAAGAAAATACTATACACCTTATATTTGAGCCTTCAAATCAT
TCAACACTGCTATTCTGGCCTTCTGCACTACCATTGCATCATGAATTGAGATTCTTGCCTATGGAAGATTGGTCTCTTGGCGAAGTTGCCTTATGTGGTGATAAAATTTT
ATCCGTTGAGGCAGATATGTATAGCGATATTATTACAACATTTTCTGTCTACAATGAAGCTGATTCAATTTTGATTACTTTAGTGGGTTCTCAAGCCACCTTCTCTGTCG
TTCCATTTGATCACGAGATAACTGTTACCCAAGAAGTATGTTTTGTGAACTTTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTATCAACGTTGACGCATTAGATATTTTCTTAGATTTAATCACCCAATTCACTGAAATTATGAACGATGAAATCTGCCTGAAAATCACACCGTCGGAGTTCTC
GATAATCGCTCGGTACGGGTGCCCTCTTTTCTTTGCAATGATGGTTATACCGCCTGTATTCTTCCCCGAGTATTCCGTTGATCGGAATCACAATTCAAAGATTTCCCTCC
AGTACTTGCACAATGCTGTCTTGGAAGCTGAAAGCTTTTCTTCTTCAATGACCATGCAACTTCAAGAACAAGAAAATACTATACACCTTATATTTGAGCCTTCAAATCAT
TCAACACTGCTATTCTGGCCTTCTGCACTACCATTGCATCATGAATTGAGATTCTTGCCTATGGAAGATTGGTCTCTTGGCGAAGTTGCCTTATGTGGTGATAAAATTTT
ATCCGTTGAGGCAGATATGTATAGCGATATTATTACAACATTTTCTGTCTACAATGAAGCTGATTCAATTTTGATTACTTTAGTGGGTTCTCAAGCCACCTTCTCTGTCG
TTCCATTTGATCACGAGATAACTGTTACCCAAGAAGTATGTTTTGTGAACTTTGTGTAA
Protein sequenceShow/hide protein sequence
MFSINVDALDIFLDLITQFTEIMNDEICLKITPSEFSIIARYGCPLFFAMMVIPPVFFPEYSVDRNHNSKISLQYLHNAVLEAESFSSSMTMQLQEQENTIHLIFEPSNH
STLLFWPSALPLHHELRFLPMEDWSLGEVALCGDKILSVEADMYSDIITTFSVYNEADSILITLVGSQATFSVVPFDHEITVTQEVCFVNFV