CuGenDBv2

Gene ID	Lsi09G015590
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	shootin-1-like
Genome location	chr09:23717719..23723381
RNA-Seq Expression	Lsi09G015590
Synteny	Lsi09G015590
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575171.1 hypothetical protein SDJN03_25810, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-83

74.47

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Query:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS
        MEE KAP   A +PP+TAPSQ    LPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTP+FRNCKAANEIRER                   
Subjt:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS

Query:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS
                   IK+LQDMYI+MMATTSE+LYIEKTSNVLDGQSLSVDNQD+R REQHHDGK G KSSTKSYESN+PSS+ PEKQ ANDGQ SG+Y+VGGS
Subjt:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS

Query:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        AFGWNFIAFTGTEPVYYG+TKE FR+KNPIVS ES
Subjt:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

KAG7013731.1 hypothetical protein SDJN02_23898 [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-82

74.04

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Query:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS
        MEE KAP   A +PP+TAPSQ    LPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKT +FRNCKAANEIRER                   
Subjt:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS

Query:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS
                   IK+LQDMYI+MMATTSE+LYIEKTSNVLDGQSLSVDNQD+R REQHHDGK G KSSTKSYESN+PSS+ PEKQ ANDGQ SG+Y+VGGS
Subjt:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS

Query:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        AFGWNFIAFTGTEPVYYG+TKE FR+KNPIVS ES
Subjt:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

XP_022959506.1 uncharacterized protein LOC111460466 [Cucurbita moschata]

4.6e-83

74.04

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Query:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS
        MEE KAP   A +PP+TAPSQ    LPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTP+FRNCKAANEIRER                   
Subjt:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS

Query:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS
                   IK+LQDMYI+MMATTSE+LYIEKTSNVLDGQSLSVDNQD+R REQHHDGK G KSSTKSYESN+PSS+ PEK  ANDGQ SG+Y+VGGS
Subjt:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS

Query:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        AFGWNFIAFTGTEPVYYG+TKE FR+KNPIVS ES
Subjt:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

XP_023548253.1 uncharacterized protein LOC111806942 [Cucurbita pepo subsp. pepo]

2.7e-83

74.89

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Query:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS
        MEE KAP   A +PP+TAPSQ    LPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTP+FRNCKAANEIRER                   
Subjt:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS

Query:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS
                   IK+LQDMYILMMATTSE+LYIEKTS VLDGQSLSVDNQD+R REQHHDGK G KSSTKSYESN+PSS+ PEKQ ANDGQ SG+Y+VGGS
Subjt:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS

Query:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        AFGWNFIAFTGTEPVYYG+TKE FREKNPIVS ES
Subjt:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

XP_038874738.1 uncharacterized protein LOC120067276 [Benincasa hispida]

1.1e-92

81.7

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Query:  MEETKA---PPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS
        MEETKA    PIQA VPP+TAPSQTLPPLPPK KKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRER                   
Subjt:  MEETKA---PPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS

Query:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS
                   IKVLQDMYILMMATTSETLYIEKTSNVLDGQS SVDNQDRR REQHHDGKLGDKSSTKSYESNNPSSY  EKQRANDGQISGSY+VGGS
Subjt:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS

Query:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        AFGWNFIAFTGTEPVYYGITKEVFREKNPIVS ES
Subjt:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7F0 Uncharacterized protein

5.0e-75

71.24

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Query:  MEETKAPPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRSDLS
        MEETKA         TTAPSQTLPPLPPK KKRP DRNAYIQ+TKMR VIRDLRPHFLEV+KTPDFRNCKAA EIRER                      
Subjt:  MEETKAPPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRSDLS

Query:  WLVRPRRGIKVLQDMYILMMATTSETLYIEKT-SNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGSAF
                IKVLQD+Y +MMA TSETLYIEKT SNVLDG +          REQHHDG LGDKSSTKSYESNNPSS  PEKQRANDGQISGSYVVGGSAF
Subjt:  WLVRPRRGIKVLQDMYILMMATTSETLYIEKT-SNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGSAF

Query:  GWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        GWNFIAFTGTEPVYYGITKEVFREKNPI S ES
Subjt:  GWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

A0A1S3C7F7 uncharacterized protein LOC103497729

3.3e-79

73.28

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Query:  MEETKAPPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRSDLS
        MEETK     A VPPTTAPSQTLPPLPPK KKRPLDRNAY+Q+TKMRAVIRDLRPHFLEV+KTPDFRNCKAA EIRER                      
Subjt:  MEETKAPPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRSDLS

Query:  WLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGSAFG
                IKVLQDMY  MM+ TSETLYIEKT NVLDG +          REQHHDGKLGDKSSTKSYESNNPSSY PEKQRANDG ISGSYVVGGSAFG
Subjt:  WLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGSAFG

Query:  WNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        WNFIAFTGTEPVYYGITKEVFREKNPI S ES
Subjt:  WNFIAFTGTEPVYYGITKEVFREKNPIVSPES

A0A6J1DSC5 uncharacterized protein LOC111023072

4.1e-69

65.82

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Query:  MEETKAPPIQATVPP-TTAPS---QTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENR
        MEE K  P   +VPP TTAPS   Q LPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK PDFRNCKAANEIRER                  
Subjt:  MEETKAPPIQATVPP-TTAPS---QTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENR

Query:  SDLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQD-RRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVG
                    IK+LQDMY LMMA+T+ETLYIEKT+N+LDGQSLSVDNQD RRPRE HHD KLGDKSS +SYESN       EKQR NDG  SG+Y+VG
Subjt:  SDLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQD-RRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVG

Query:  GSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        GSAFGWNFI F G EPVYYG+TKE +REKNPIVS ES
Subjt:  GSAFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

A0A6J1H517 uncharacterized protein LOC111460466

2.2e-83

74.04

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Query:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS
        MEE KAP   A +PP+TAPSQ    LPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTP+FRNCKAANEIRER                   
Subjt:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS

Query:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS
                   IK+LQDMYI+MMATTSE+LYIEKTSNVLDGQSLSVDNQD+R REQHHDGK G KSSTKSYESN+PSS+ PEK  ANDGQ SG+Y+VGGS
Subjt:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS

Query:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        AFGWNFIAFTGTEPVYYG+TKE FR+KNPIVS ES
Subjt:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

A0A6J1KWG6 uncharacterized protein LOC111499323

8.5e-83

74.04

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Query:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS
        MEE KA    A +PP+TAPSQ    LPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTP+FRNCKAANEIRER                   
Subjt:  MEETKAPPIQATVPPTTAPSQ---TLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRS

Query:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS
                   IK+LQDMYILMMATTSE+LYIEKTSNVLDGQS+SVDNQD+R REQ+HDGK G KSSTKSYESN+PSS+ PEKQ ANDGQ SG+Y+VGGS
Subjt:  DLSWLVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGS

Query:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES
        AFGWNFIAFTGTEPVYYG+TKE FREKNPIVS ES
Subjt:  AFGWNFIAFTGTEPVYYGITKEVFREKNPIVSPES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G01730.1 unknown protein

6.1e-17

35.19

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Query:  APPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQ---YTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLD-EITEECKGDLAENRSDLSW
        A P Q T PP+T    T  P   + +KR L+ N  I+   Y KMR +++DLRPH LEVL+TPD RN KA  EI+E+  L  ++ EE  G+          
Subjt:  APPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQ---YTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLD-EITEECKGDLAENRSDLSW

Query:  LVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGSAFGW
           P+R      D      ATT+ T     T++VL                             +S E+   SS G            G  VVGGSAFGW
Subjt:  LVRPRRGIKVLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGSAFGW

Query:  NFIAF--TGTEPVYYGITKEVFREKNPIVSPES
        NFI     GTEPVY G++KE +R  +PI+  E+
Subjt:  NFIAF--TGTEPVYYGITKEVFREKNPIVSPES

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGAAACCAAAGCACCACCAATCCAAGCGACAGTCCCTCCAACCACAGCTCCATCTCAGACATTGCCTCCTCTCCCTCCGAAACCCAAGAAGAGGCCACTTGACAG
AAATGCTTATATCCAATATACAAAGATGCGCGCTGTTATTAGAGATCTTCGTCCTCATTTTCTCGAGGTTTTGAAGACTCCTGACTTTCGCAATTGCAAGGCAGCTAACG
AAATTCGAGAAAGAAGGAGCCTTGATGAGATCACTGAGGAGTGTAAGGGAGATTTGGCAGAGAATAGATCAGATTTGTCATGGCTAGTGCGCCCAAGGAGAGGAATAAAG
GTTCTACAGGACATGTATATATTGATGATGGCAACAACTTCAGAAACTCTTTACATCGAGAAGACTAGTAATGTGCTCGATGGTCAGTCCTTGTCAGTTGATAATCAAGA
TCGACGACCCCGTGAACAACACCACGATGGTAAACTGGGGGACAAGTCATCTACAAAATCATATGAAAGCAATAACCCTTCAAGTTATGGCCCAGAAAAGCAGCGGGCAA
ATGATGGCCAGATATCTGGATCTTATGTTGTTGGTGGATCGGCATTTGGCTGGAATTTCATTGCCTTCACAGGTACCGAACCAGTATATTATGGAATTACGAAGGAAGTA
TTTCGAGAAAAAAATCCCATTGTTTCACCAGAATCATGA

mRNA sequence

Show/hide mRNA sequence

TCTGAATCAAGTATAGAGTATCAAGTAGCGAGTATATAACATAGAGCGTAGCATTGAGTATCGAGGATCGAAGAAACTTCTAAATCGCAGCATGTGAGTAGTTTTCAGGG
TCAAATGAGTAAATTCACAAAGTGCTGATGCAAGTAGAAGGGTACTTTTCATTCAATTTCAATCTGTAGGCTATTTTTCATTTGAATCTCTAAAAATAGACTATCCGTAC
AAAAAAAATCCAAGCATAACACCTAAATTTTGAAAAGTAGGTCATATTTCATTCTCCCCCATTATAAACCATTTTACTTGGACACTTTTACCATTTGTTCTCTTCTTCAT
CCTCGGAAACCCTTCTTCACGATTCGAGAACGAGAATTGGAGGTTTCATCTTTCATGGAGGAAACCAAAGCACCACCAATCCAAGCGACAGTCCCTCCAACCACAGCTCC
ATCTCAGACATTGCCTCCTCTCCCTCCGAAACCCAAGAAGAGGCCACTTGACAGAAATGCTTATATCCAATATACAAAGATGCGCGCTGTTATTAGAGATCTTCGTCCTC
ATTTTCTCGAGGTTTTGAAGACTCCTGACTTTCGCAATTGCAAGGCAGCTAACGAAATTCGAGAAAGAAGGAGCCTTGATGAGATCACTGAGGAGTGTAAGGGAGATTTG
GCAGAGAATAGATCAGATTTGTCATGGCTAGTGCGCCCAAGGAGAGGAATAAAGGTTCTACAGGACATGTATATATTGATGATGGCAACAACTTCAGAAACTCTTTACAT
CGAGAAGACTAGTAATGTGCTCGATGGTCAGTCCTTGTCAGTTGATAATCAAGATCGACGACCCCGTGAACAACACCACGATGGTAAACTGGGGGACAAGTCATCTACAA
AATCATATGAAAGCAATAACCCTTCAAGTTATGGCCCAGAAAAGCAGCGGGCAAATGATGGCCAGATATCTGGATCTTATGTTGTTGGTGGATCGGCATTTGGCTGGAAT
TTCATTGCCTTCACAGGTACCGAACCAGTATATTATGGAATTACGAAGGAAGTATTTCGAGAAAAAAATCCCATTGTTTCACCAGAATCATGATTTTGAAAAGTAATATG
CTAGGGAAGTGTTGTATGTTATCATGACTTACGATGAGCATTCAATAGATGAGATTGCTTCTATTTAGAATGCGAATGTACAATGTAGAAGTTCAAGTATGAAGATATTA
ACACTGATCTTCCTTTATCTAATACCTTTGTTGATTAACATCTGGAAATGGTGTCTTTGTTGAACCAATTTCTGAGTTTTCTAATTTTTCATTCTGTAAAAATGAGCTAT
ACTATATGCATCTGAATTTAATATTTTAAATGATTAAATT

Protein sequence

Show/hide protein sequence

MEETKAPPIQATVPPTTAPSQTLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPDFRNCKAANEIRERRSLDEITEECKGDLAENRSDLSWLVRPRRGIK
VLQDMYILMMATTSETLYIEKTSNVLDGQSLSVDNQDRRPREQHHDGKLGDKSSTKSYESNNPSSYGPEKQRANDGQISGSYVVGGSAFGWNFIAFTGTEPVYYGITKEV
FREKNPIVSPES

Lsi09G015590 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome