CuGenDBv2

Gene ID	Lsi09G016370
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	cell number regulator 6
Genome location	chr09:24683579..24688684
RNA-Seq Expression	Lsi09G016370
Synteny	Lsi09G016370
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR006461 - PLAC8 motif-containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

TYK24757.1 cell number regulator 6 [Cucumis melo var. makuwa]

1.4e-53

69.05

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q   + WRG+FCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETL+FAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI
                         EMRNHLSDN+TMQMTVI+PPALQ MNTN+DNE  PPSSS   SRELAIT I
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI

XP_004140611.1 cell number regulator 6 [Cucumis sativus]

9.2e-53

68.45

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q   + WRG+ CPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI
                         EMRNHLSDN+TMQMTVI+PPALQ MNTN+DNE  PPSSS   S+ELAIT I
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI

XP_008460181.1 PREDICTED: cell number regulator 6 [Cucumis melo]

1.4e-53

69.05

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q   + WRG+FCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETL+FAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI
                         EMRNHLSDN+TMQMTVI+PPALQ MNTN+DNE  PPSSS   SRELAIT I
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI

XP_023000244.1 cell number regulator 6-like [Cucurbita maxima]

2.5e-50

66.47

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q T S WRG+ CPCVLFGENVETL+EEIPWQNACVCHAMCVEGGMAVAAATAL HGIDPQTSFLISE+LLFAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI
                         EMRNHLSD+V MQMTVI+PPALQ MNT + NE+AP +SS  S+ELAITTI
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI

XP_038906490.1 cell number regulator 6 [Benincasa hispida]

1.5e-55

70.66

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        + T + WRG+ CPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI
                         EMRNHLSDNVTMQMTVINPPALQEMNTNND+E AP SSS  S+ELAIT I
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDV6 Uncharacterized protein

4.5e-53

68.45

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q   + WRG+ CPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI
                         EMRNHLSDN+TMQMTVI+PPALQ MNTN+DNE  PPSSS   S+ELAIT I
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI

A0A1S3CBY6 cell number regulator 6

6.9e-54

69.05

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q   + WRG+FCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETL+FAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI
                         EMRNHLSDN+TMQMTVI+PPALQ MNTN+DNE  PPSSS   SRELAIT I
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI

A0A5D3DM99 Cell number regulator 6

6.9e-54

69.05

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q   + WRG+FCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETL+FAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI
                         EMRNHLSDN+TMQMTVI+PPALQ MNTN+DNE  PPSSS   SRELAIT I
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS---SRELAITTI

A0A6J1HNK1 cell number regulator 6-like

4.6e-50

65.87

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q T S WRG+ CPCVLFGENVETL+EEIPWQNACVCHAMCVEGGMAVAAATAL HGIDPQTSFLISE+LLFAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI
                         EMRNHLSD+V MQMTVI+PPALQ MN ++ NE+AP +SS  S+ELAITTI
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI

A0A6J1KJB6 cell number regulator 6-like

1.2e-50

66.47

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Query:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------
        Q T S WRG+ CPCVLFGENVETL+EEIPWQNACVCHAMCVEGGMAVAAATAL HGIDPQTSFLISE+LLFAWWMCGIYTGL                  
Subjt:  QSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL------------------

Query:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI
                         EMRNHLSD+V MQMTVI+PPALQ MNT + NE+AP +SS  S+ELAITTI
Subjt:  -----------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSS--SRELAITTI

SwissProt top hits

e value

%identity

Alignment

B6SGC5 Cell number regulator 6

1.3e-28

41.72

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Query:  GLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL--------------------------
        GLFCPCVLFG NVE +RE+IPW   CVCHA+ VEGG+ +A  TA+FHG+DP+TSFLI E L+F+WW+C  YTG+                          
Subjt:  GLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGL--------------------------

Query:  ---------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSSSRE
                 E    L++N  + MTV+NPP +QEM+   + E      S  +
Subjt:  ---------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSSSRE

Arabidopsis top hits

e value

%identity

Alignment

AT2G45010.1 PLAC8 family protein

3.2e-35

48.43

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Query:  AQSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHG-IDPQTSFLISETLLFAWWMCGIYTGL----------------
        A+   S   GLFCPCVLFG N+E +REEIPW   CVCHA+CVEGGMA+AA TALF G IDPQT+ +I E L FAWWMCGIY+GL                
Subjt:  AQSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHG-IDPQTSFLISETLLFAWWMCGIYTGL----------------

Query:  -------------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSSS
                           EM+NHLSD      T ++PP +QEMNT    + +  SSSS
Subjt:  -------------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSSS

AT2G45010.2 PLAC8 family protein

3.2e-35

48.43

Show/hide

Query:  AQSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHG-IDPQTSFLISETLLFAWWMCGIYTGL----------------
        A+   S   GLFCPCVLFG N+E +REEIPW   CVCHA+CVEGGMA+AA TALF G IDPQT+ +I E L FAWWMCGIY+GL                
Subjt:  AQSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHG-IDPQTSFLISETLLFAWWMCGIYTGL----------------

Query:  -------------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSSS
                           EM+NHLSD      T ++PP +QEMNT    + +  SSSS
Subjt:  -------------------EMRNHLSDNVTMQMTVINPPALQEMNTNNDNETAPPSSSS

AT5G51400.1 PLAC8 family protein

1.7e-28

43.83

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Query:  SSWRGLFCPCVLFGENVETLR-EEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTG----------------------
        S W GLFCP VLFG   ETL  EE  W+ AC+CH++ VEGG+  A+  A   GIDP TS LI E LLF WWMCGIYTG                      
Subjt:  SSWRGLFCPCVLFGENVETLR-EEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTG----------------------

Query:  -------------LEMRNHLSDNVTMQMTVINPPALQEMNTNNDNE-----TAPPSSSSREL
                      EM+N LSDN  M MTVINPP +QEM+ + D +     + P S  S +L
Subjt:  -------------LEMRNHLSDNVTMQMTVINPPALQEMNTNNDNE-----TAPPSSSSREL

Sequences

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CDS sequence

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GATCTGTTAGCAGCCATTGAAAACCTTTACAAAGTAATCGATAACCACGAGAATGCAATATGCTTGAATCACAGGAGTTCATCAGCGGCTGAAGCCATTTTGACAGCGAT
TCAACGTAAGCTGCTGCCAGTATCTCCACCGCAATTGCAGGTGGATGAAACTACAGAAGTTGATTTGAACGCCATCGAAGAAGAAGAAGAAGAAGAAGAAGTGGAAATGT
GTTGGATTGGGAGTAATATTGTTTTGTACATTGTATTTGGTTTGAATTTTGGTGAAGAAAATGGCAGAGGGAACTACACAATCAAGATATGTGAGATTGACGAGAGATCA
AGCGCCATTGGAGGATATCACCCCTGGAGAGCTCAATCAACCTATTCAAGTTGGAGAGGGCTGTTTTGTCCTTGTGTGTTATTTGGAGAAAATGTAGAGACATTGAGAGA
AGAAATTCCATGGCAAAATGCATGTGTTTGCCATGCAATGTGTGTAGAAGGAGGAATGGCAGTGGCAGCTGCAACAGCACTTTTCCATGGCATTGATCCCCAAACTTCTT
TCTTGATTTCTGAAACCCTCTTGTTTGCTTGGTGGATGTGTGGCATTTATACTGGCTTAGAGATGAGGAACCATCTTTCTGATAATGTTACCATGCAAATGACTGTTATC
AATCCTCCTGCCCTTCAAGAGATGAATACCAACAATGACAATGAAACTGCACCACCCTCTTCCTCATCTCGAGAACTTGCGATCACAACGATTTAG

mRNA sequence

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Protein sequence

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DLLAAIENLYKVIDNHENAICLNHRSSSAAEAILTAIQRKLLPVSPPQLQVDETTEVDLNAIEEEEEEEEVEMCWIGSNIVLYIVFGLNFGEENGRGNYTIKICEIDERS
SAIGGYHPWRAQSTYSSWRGLFCPCVLFGENVETLREEIPWQNACVCHAMCVEGGMAVAAATALFHGIDPQTSFLISETLLFAWWMCGIYTGLEMRNHLSDNVTMQMTVI
NPPALQEMNTNNDNETAPPSSSSRELAITTI

Lsi09G016370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome