; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G016420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G016420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:24734069..24735130
RNA-Seq ExpressionLsi09G016420
SyntenyLsi09G016420
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646781.1 hypothetical protein Csa_005116, partial [Cucumis sativus]2.5e-8262.35Show/hide
Query:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIPYPER
        F   V+DM+ LID   TLG+VD MADA FSP+ FCIMADS  SI++A G+QLWPPFFD +  + +++  WF LTH+FPLA+EL +SGYTSLTFSI   ER
Subjt:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIPYPER

Query:  -----AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQ
             A+ KFEGPNGLLR+++F L     PL I + DLS F SMDS EFS ++ EYHMFDYV V ITS RV+ SY+++QETI+T +DGQC+IGGVRAPNQ
Subjt:  -----AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQ

Query:  IQFLITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA
        +QF+IT++ P+AF+H AS +KRIWLFK  NSTKG+ITAPLGL  RL +FFCDV A
Subjt:  IQFLITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA

XP_004146827.2 uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus]6.5e-9165.6Show/hide
Query:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSIPY-PER
        FNF+VN+MR L+DA  TLG+ D   DATFSPEMFC+MADS  SI++AIGLQLWPPFFDHY C  LK SWFF + IFPLA  L+D GYTS +FSI   P  
Subjt:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSIPY-PER

Query:  AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQFLI
        A+++F+GP  LL E+   L + H PL I +FDLS+F SMDS++FS L+ +YHMFD VHVTITS RV  SYS MQETIL+ Q+GQCIIGG+RAP++++F+I
Subjt:  AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQFLI

Query:  TLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA
        TL P E F+HIAS TKR+W FK CNS +GLITAPLGLN+RL AFFCDVFA
Subjt:  TLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA

XP_008459734.1 PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo]4.2e-9868.77Show/hide
Query:  MLFNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSI-PYP
        M FNFVVN+M+ LIDA  TLG+ D++ADATFSPEMFC+M DS  SI++ IGLQLWPPFFDHY C++L+ SWFF   IFPLA +L+DSGYTS +FSI P P
Subjt:  MLFNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSI-PYP

Query:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF
        + A++KF+GPNGLL E +FEL +SH+PL I +FDLS+F SMDS+EFS ++ +YHMFD VHVTITS RV  SYS+MQETIL  Q+GQCIIGG++APNQ+QF
Subjt:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF

Query:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFAE
        ++TL P E F+HIAS TKR+W FK CNS KGLITAPLGLNSRL A F DVFAE
Subjt:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFAE

XP_011652354.1 uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus]6.8e-8864.8Show/hide
Query:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSIPY-PER
        FNF+VN+MR L+DA  TLG+ D   DATFSPEMFC+MADS  SI++AIGLQLWPPFFDHY C  LK SWFF + IFPLA  L+D GYTS +FSI   P  
Subjt:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSIPY-PER

Query:  AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQFLI
        A+++F+GP  LL E+   L + H PL I +FDLS+F SMDS++FS L+ +YHMFD VHVTITS RV  SYS MQETIL+    QCIIGG+RAP++++F+I
Subjt:  AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQFLI

Query:  TLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA
        TL P E F+HIAS TKR+W FK CNS +GLITAPLGLN+RL AFFCDVFA
Subjt:  TLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA

XP_038876014.1 uncharacterized protein LOC120068348 [Benincasa hispida]1.4e-10977.25Show/hide
Query:  MLFNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVC-NQLKRSWFFLTHIFPLALELEDSGYTSLTFSI--P
        MLFNFVVNDMR LI+AAT +GMVD MAD TFSPEM CIMADSY SI AAIG+QLWPPFFDHY C N L+RSWF+LT IFPL LEL DSGYTS TFSI  P
Subjt:  MLFNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVC-NQLKRSWFFLTHIFPLALELEDSGYTSLTFSI--P

Query:  YPERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQI
        Y ERA+LKFEGPNGLL EI+F+L++SH+PLY+ EFDLS+F S+DS+EFS +VDEYHMFDYVHVTITSTRVT SY+++QETILT QDGQC+IGGVRAPNQI
Subjt:  YPERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQI

Query:  QFLITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFAE
        QF+ITL P E F+HIA   KRIW FK  NSTKG+ITAP+GLN RL AFFCDVFAE
Subjt:  QFLITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFAE

TrEMBL top hitse value%identityAlignment
A0A0A0KA18 Uncharacterized protein1.4e-7860.64Show/hide
Query:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIP--YP
        F   V+DM+ LID+  TLG+VD MADA FSP+MFCI+ADS  S+ +A GLQLWPPFFD +  + L++  WF LTH+FPLALEL +SG TSLTFSI     
Subjt:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIP--YP

Query:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF
          A+ KFEGPNGLLRE++F L     PL I + DLS F +MDS+EFSY++ +Y+MFDYV V ITS RV+ S S +QET ++++DG+CI+GGVRAP Q+QF
Subjt:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF

Query:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCD
        +IT++ P AF H AS +KRIWLFK  NSTKG+ITAPLGL  RL +FFCD
Subjt:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCD

A0A0A0KFM5 Uncharacterized protein2.3e-8161.96Show/hide
Query:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIPYPER
        F   V+DM+ LID+  TLG+VD MADA FSP+ FCIMADS  SI++A G+QLWPPFFD +  + +++  WF LTH+F LA+EL +SGYTSLTFSI   ER
Subjt:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIPYPER

Query:  -----AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQ
             A+ KFEGPNGLLR+++F L     PL I + DLS F SMDS EFS ++ EYHMFDYV V ITS RV+ SY+++QETI+T +DGQC+IGGVRAPNQ
Subjt:  -----AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQ

Query:  IQFLITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA
        +QF+IT++ P AF H AS +KRIWLFK  NSTKG+ITAPLGL  RL +FFCDV A
Subjt:  IQFLITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA

A0A0A0LIF2 Uncharacterized protein3.2e-9165.6Show/hide
Query:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSIPY-PER
        FNF+VN+MR L+DA  TLG+ D   DATFSPEMFC+MADS  SI++AIGLQLWPPFFDHY C  LK SWFF + IFPLA  L+D GYTS +FSI   P  
Subjt:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSIPY-PER

Query:  AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQFLI
        A+++F+GP  LL E+   L + H PL I +FDLS+F SMDS++FS L+ +YHMFD VHVTITS RV  SYS MQETIL+ Q+GQCIIGG+RAP++++F+I
Subjt:  AELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQFLI

Query:  TLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA
        TL P E F+HIAS TKR+W FK CNS +GLITAPLGLN+RL AFFCDVFA
Subjt:  TLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFA

A0A1S3CBB9 uncharacterized protein LOC1034987762.1e-9868.77Show/hide
Query:  MLFNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSI-PYP
        M FNFVVN+M+ LIDA  TLG+ D++ADATFSPEMFC+M DS  SI++ IGLQLWPPFFDHY C++L+ SWFF   IFPLA +L+DSGYTS +FSI P P
Subjt:  MLFNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSI-PYP

Query:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF
        + A++KF+GPNGLL E +FEL +SH+PL I +FDLS+F SMDS+EFS ++ +YHMFD VHVTITS RV  SYS+MQETIL  Q+GQCIIGG++APNQ+QF
Subjt:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF

Query:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFAE
        ++TL P E F+HIAS TKR+W FK CNS KGLITAPLGLNSRL A F DVFAE
Subjt:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCDVFAE

A0A5D3DMK7 Uncharacterized protein9.6e-8060.24Show/hide
Query:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIP--YP
        F   VNDM+ LID   TLG+VD MAD  FSP+MFCIMADS  SI++A G++L PPFFD +  +++++  WF LTH+FPLA++L +SGYTS TFSI     
Subjt:  FNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKR-SWFFLTHIFPLALELEDSGYTSLTFSIP--YP

Query:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF
          A+ +FEGPNGLLRE++F L     PL I E DLS F +MDS+EFS ++ EYHMFDYV V IT+ RV+ SY+++QETI+T QDGQCIIGG+R PN++QF
Subjt:  ERAELKFEGPNGLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQF

Query:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCD
        +IT++ P+AF+H AS +KRIWLFK  NSTKG+ITAPLGL+ RL +FFCD
Subjt:  LITLNPPEAFHHIASLTKRIWLFKTCNSTKGLITAPLGLNSRLAAFFCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTCAATTTCGTCGTTAACGATATGCGCGCTCTGATTGATGCGGCCACCACATTGGGAATGGTCGATCGAATGGCGGATGCAACATTTTCACCGGAAATGTTTTG
CATAATGGCCGATTCATATCCTTCCATTAACGCCGCCATCGGCCTTCAACTCTGGCCTCCATTCTTTGATCATTACGTCTGCAACCAGCTTAAGCGTTCTTGGTTCTTCC
TCACCCACATTTTCCCTCTTGCCCTAGAATTGGAAGATTCTGGTTACACTTCTTTGACCTTCTCTATCCCTTACCCTGAACGCGCCGAACTCAAATTCGAAGGCCCAAAT
GGCCTTCTTCGCGAAATCGATTTCGAATTGTTTTGGTCCCATAATCCATTGTACATCGACGAATTTGATCTCTCAATTTTTGCTTCCATGGATTCTCGAGAATTCTCCTA
CCTTGTCGATGAGTATCATATGTTTGATTACGTTCATGTTACTATAACGAGTACACGAGTGACAGTCTCTTATTCAATGATGCAAGAGACAATTCTTACCTCACAGGATG
GACAATGCATAATTGGGGGTGTTAGAGCACCAAATCAAATTCAATTCTTAATCACTTTGAATCCACCAGAAGCTTTCCATCATATTGCAAGTCTAACGAAGAGGATATGG
CTCTTCAAGACATGTAATTCTACCAAAGGTTTAATTACTGCTCCTCTTGGATTGAATAGTCGACTTGCCGCTTTTTTCTGTGATGTGTTTGCAGAATAA
mRNA sequenceShow/hide mRNA sequence
CTAAAAGCCCCCCTCCAAGAACAAGAATCCCAAGAAAAGAACTCTGCAAATATCAAAAACGATGTTGTTCAATTTCGTCGTTAACGATATGCGCGCTCTGATTGATGCGG
CCACCACATTGGGAATGGTCGATCGAATGGCGGATGCAACATTTTCACCGGAAATGTTTTGCATAATGGCCGATTCATATCCTTCCATTAACGCCGCCATCGGCCTTCAA
CTCTGGCCTCCATTCTTTGATCATTACGTCTGCAACCAGCTTAAGCGTTCTTGGTTCTTCCTCACCCACATTTTCCCTCTTGCCCTAGAATTGGAAGATTCTGGTTACAC
TTCTTTGACCTTCTCTATCCCTTACCCTGAACGCGCCGAACTCAAATTCGAAGGCCCAAATGGCCTTCTTCGCGAAATCGATTTCGAATTGTTTTGGTCCCATAATCCAT
TGTACATCGACGAATTTGATCTCTCAATTTTTGCTTCCATGGATTCTCGAGAATTCTCCTACCTTGTCGATGAGTATCATATGTTTGATTACGTTCATGTTACTATAACG
AGTACACGAGTGACAGTCTCTTATTCAATGATGCAAGAGACAATTCTTACCTCACAGGATGGACAATGCATAATTGGGGGTGTTAGAGCACCAAATCAAATTCAATTCTT
AATCACTTTGAATCCACCAGAAGCTTTCCATCATATTGCAAGTCTAACGAAGAGGATATGGCTCTTCAAGACATGTAATTCTACCAAAGGTTTAATTACTGCTCCTCTTG
GATTGAATAGTCGACTTGCCGCTTTTTTCTGTGATGTGTTTGCAGAATAA
Protein sequenceShow/hide protein sequence
MLFNFVVNDMRALIDAATTLGMVDRMADATFSPEMFCIMADSYPSINAAIGLQLWPPFFDHYVCNQLKRSWFFLTHIFPLALELEDSGYTSLTFSIPYPERAELKFEGPN
GLLREIDFELFWSHNPLYIDEFDLSIFASMDSREFSYLVDEYHMFDYVHVTITSTRVTVSYSMMQETILTSQDGQCIIGGVRAPNQIQFLITLNPPEAFHHIASLTKRIW
LFKTCNSTKGLITAPLGLNSRLAAFFCDVFAE