; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G016430 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G016430
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr09:24738313..24739360
RNA-Seq ExpressionLsi09G016430
SyntenyLsi09G016430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646781.1 hypothetical protein Csa_005116, partial [Cucumis sativus]4.5e-6049.39Show/hide
Query:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--N
        F   V+DM+ LI+ + TL +V+ M DA FSP+ FC++ADS   +  +A G+QLWPPFFD ++ + + Q  WF L   F LA++L  SGYTSLTFS+    
Subjt:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--N

Query:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ
           AQ  F+GPNGLLR++   L      + IG+ DLS FV+MDS++FS +++ YH FDYV V +TS ++ F +AI+++T++T  +G C+IGG++APNQ+Q
Subjt:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ

Query:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        F I++    AFY    Q+KRIW+FK  NSTKG+ITAPLGL GR V+F
Subjt:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

XP_004146827.2 uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus]6.8e-7255.92Show/hide
Query:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSE
        F+F+VN+MR L++A  TL + +H  DATFSPEMFCL+ADS + +  +AIGLQLWPPFFDHYFC  L+ SWF  ++ F LA  L+  GYTS +FS+  +  
Subjt:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSE

Query:  RAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFT
         AQ+ FQGP  LL E+ L L F    + I +FDLSVFV+MDSQQFS L++ YH FD VHVT+TS ++IF ++ M++T+L+ +NG CIIGGL+AP++++F 
Subjt:  RAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFT

Query:  ISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        I+L P + F  +  QTKR+W FK CNS +GLITAPLGLN R VAF
Subjt:  ISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

XP_008459734.1 PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo]4.1e-7758.13Show/hide
Query:  MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PN
        M F+FVVN+M+ LI+A+ TL + + + DATFSPEMFC++ DS + +  + IGLQLWPPFFDHYFC++LQ SWF  N+ F LA  LQ SGYTS +FS+ PN
Subjt:  MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PN

Query:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ
         + AQ+ FQGPNGLL E   EL ++   + I  FDLSVFV+MDSQ+FS +++ YH FD VHVT+TS ++IF ++IM++T+L  +NG CIIGG+KAPNQ+Q
Subjt:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ

Query:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVA
        F ++L P++ F  +  QTKR+W FK CNS KGLITAPLGLN R VA
Subjt:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVA

XP_011652354.1 uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus]5.4e-6955.1Show/hide
Query:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSE
        F+F+VN+MR L++A  TL + +H  DATFSPEMFCL+ADS + +  +AIGLQLWPPFFDHYFC  L+ SWF  ++ F LA  L+  GYTS +FS+  +  
Subjt:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSE

Query:  RAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFT
         AQ+ FQGP  LL E+ L L F    + I +FDLSVFV+MDSQQFS L++ YH FD VHVT+TS ++IF ++ M++T+L+ +   CIIGGL+AP++++F 
Subjt:  RAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFT

Query:  ISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        I+L P + F  +  QTKR+W FK CNS +GLITAPLGLN R VAF
Subjt:  ISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

XP_038876014.1 uncharacterized protein LOC120068348 [Benincasa hispida]1.5e-8261.85Show/hide
Query:  MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFC-NKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV--
        M F+FVVNDMR LINA T + MV+ M D TFSPEM C++ADSY+ +  AAIG+QLWPPFFDHYFC N LQRSWF L K F L L+L  SGYTS TFS+  
Subjt:  MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFC-NKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV--

Query:  PNSERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQ
        P  ERA+L F+GPNGLL EI  +L ++   +Y+G+FDLSVFV++DSQ+FS +V  YH FDYVHVT+TS+++ F +AI+++T+LT ++G C+IGG++APNQ
Subjt:  PNSERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQ

Query:  IQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        IQF I+L PA+ FY +  + KRIW FK  NSTKG+ITAP+GLNGR VAF
Subjt:  IQFTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

TrEMBL top hitse value%identityAlignment
A0A0A0KFM5 Uncharacterized protein1.7e-6048.99Show/hide
Query:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--N
        F   V+DM+ LI+++ TL +V+ M DA FSP+ FC++ADS   +  +A G+QLWPPFFD ++ + + Q  WF L   F+LA++L  SGYTSLTFS+    
Subjt:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--N

Query:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ
           AQ  F+GPNGLLR++   L      + IG+ DLS FV+MDS++FS +++ YH FDYV V +TS ++ F +AI+++T++T  +G C+IGG++APNQ+Q
Subjt:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ

Query:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        F I++    AF+    Q+KRIW+FK  NSTKG+ITAPLGL GR V+F
Subjt:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

A0A0A0LIF2 Uncharacterized protein3.3e-7255.92Show/hide
Query:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSE
        F+F+VN+MR L++A  TL + +H  DATFSPEMFCL+ADS + +  +AIGLQLWPPFFDHYFC  L+ SWF  ++ F LA  L+  GYTS +FS+  +  
Subjt:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PNSE

Query:  RAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFT
         AQ+ FQGP  LL E+ L L F    + I +FDLSVFV+MDSQQFS L++ YH FD VHVT+TS ++IF ++ M++T+L+ +NG CIIGGL+AP++++F 
Subjt:  RAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFT

Query:  ISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        I+L P + F  +  QTKR+W FK CNS +GLITAPLGLN R VAF
Subjt:  ISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

A0A1S3CBB9 uncharacterized protein LOC1034987762.0e-7758.13Show/hide
Query:  MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PN
        M F+FVVN+M+ LI+A+ TL + + + DATFSPEMFC++ DS + +  + IGLQLWPPFFDHYFC++LQ SWF  N+ F LA  LQ SGYTS +FS+ PN
Subjt:  MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSV-PN

Query:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ
         + AQ+ FQGPNGLL E   EL ++   + I  FDLSVFV+MDSQ+FS +++ YH FD VHVT+TS ++IF ++IM++T+L  +NG CIIGG+KAPNQ+Q
Subjt:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ

Query:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVA
        F ++L P++ F  +  QTKR+W FK CNS KGLITAPLGLN R VA
Subjt:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVA

A0A5D3DMK7 Uncharacterized protein2.9e-6048.99Show/hide
Query:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--N
        F   VNDM+ LI+ + TL +V+ M D  FSP+MFC++ADS + +  +A G++L PPFFD ++ +++ Q  WF L   F LA++L  SGYTS TFS+    
Subjt:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKL-QRSWFLLNKSFSLALKLQHSGYTSLTFSVP--N

Query:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ
           AQ  F+GPNGLLRE+   L      + IG+ DLS FVTMDSQ+FS +++ YH FDYV V +T+ ++ F +AI+++T++T ++G CIIGG++ PN++Q
Subjt:  SERAQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQ

Query:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        F I++    AFY    Q+KRIW+FK  NSTKG+ITAPLGL+GR V+F
Subjt:  FTISLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

A0A6J1L2R2 uncharacterized protein LOC1114993083.2e-5947.13Show/hide
Query:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSVPNSER
        F FV+N M+ L++A + +   + M D  FS EMF ++ADSY       I L LWP FFD Y CN+L +SW  +   F L + ++ SG+ SL+F+V   E 
Subjt:  FSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSVPNSER

Query:  AQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFTI
        A+L FQ PNGL  E+  EL  + D + +G FD S FV++DS++F  +V  YH FDYVHVTVTS+++IF +AIM +T+LT  +G C+IGG+ APN ++F I
Subjt:  AQLNFQGPNGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFTI

Query:  SLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF
        +L P +AFY M  ++KR+W++K   +TKG+I  PLGL  RFVA+
Subjt:  SLRPAKAFYDMVRQTKRIWIFKLCNSTKGLITAPLGLNGRFVAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTCAGTTTCGTCGTCAACGATATGCGCGCCCTGATAAACGCGATCACCACATTGACAATGGTCGAACACATGGTGGATGCGACATTTTCACCGGAAATGTTTTG
CCTAATTGCCGATTCATATATTTTCACTGACACCGCCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAACAAGCTTCAACGTTCTTGGTTTC
TCCTCAACAAGTCTTTCTCTCTTGCCCTAAAATTACAACATTCTGGTTACACTTCTTTGACCTTCTCTGTCCCTAACTCTGAACGTGCCCAACTCAATTTCCAAGGCCCA
AATGGCCTTCTTCGCGAAATTCCTCTCGAATTGGGTTTTACCGACGATCTGATGTACATCGGCAAATTTGATCTCTCTGTTTTTGTTACCATGGATTCTCAACAATTCTC
TCGCCTTGTCGCTGGTTATCATAGGTTTGATTACGTTCATGTTACTGTAACGAGCTCACAAATGATATTCATTTTCGCAATTATGGAACAGACAGTTCTTACAACACGTA
ATGGAGGATGTATAATTGGAGGTCTTAAAGCACCAAATCAAATTCAATTCACAATCTCTTTAAGACCAGCAAAAGCTTTTTATGATATGGTAAGACAAACGAAGAGGATT
TGGATATTCAAGTTATGTAATTCAACCAAAGGTTTAATTACTGCTCCTCTTGGATTGAATGGTCGATTTGTCGCTTTTCTTGTGAAGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTCAGTTTCGTCGTCAACGATATGCGCGCCCTGATAAACGCGATCACCACATTGACAATGGTCGAACACATGGTGGATGCGACATTTTCACCGGAAATGTTTTG
CCTAATTGCCGATTCATATATTTTCACTGACACCGCCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAACAAGCTTCAACGTTCTTGGTTTC
TCCTCAACAAGTCTTTCTCTCTTGCCCTAAAATTACAACATTCTGGTTACACTTCTTTGACCTTCTCTGTCCCTAACTCTGAACGTGCCCAACTCAATTTCCAAGGCCCA
AATGGCCTTCTTCGCGAAATTCCTCTCGAATTGGGTTTTACCGACGATCTGATGTACATCGGCAAATTTGATCTCTCTGTTTTTGTTACCATGGATTCTCAACAATTCTC
TCGCCTTGTCGCTGGTTATCATAGGTTTGATTACGTTCATGTTACTGTAACGAGCTCACAAATGATATTCATTTTCGCAATTATGGAACAGACAGTTCTTACAACACGTA
ATGGAGGATGTATAATTGGAGGTCTTAAAGCACCAAATCAAATTCAATTCACAATCTCTTTAAGACCAGCAAAAGCTTTTTATGATATGGTAAGACAAACGAAGAGGATT
TGGATATTCAAGTTATGTAATTCAACCAAAGGTTTAATTACTGCTCCTCTTGGATTGAATGGTCGATTTGTCGCTTTTCTTGTGAAGACATGA
Protein sequenceShow/hide protein sequence
MPFSFVVNDMRALINAITTLTMVEHMVDATFSPEMFCLIADSYIFTDTAAIGLQLWPPFFDHYFCNKLQRSWFLLNKSFSLALKLQHSGYTSLTFSVPNSERAQLNFQGP
NGLLREIPLELGFTDDLMYIGKFDLSVFVTMDSQQFSRLVAGYHRFDYVHVTVTSSQMIFIFAIMEQTVLTTRNGGCIIGGLKAPNQIQFTISLRPAKAFYDMVRQTKRI
WIFKLCNSTKGLITAPLGLNGRFVAFLVKT