; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G016440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G016440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein-serine/threonine phosphatase
Genome locationchr09:24741599..24742860
RNA-Seq ExpressionLsi09G016440
SyntenyLsi09G016440
Gene Ontology termsGO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0016020 - membrane (cellular component)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052701.1 RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo var. makuwa]1.1e-2572.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS++NGNKD+PTFDGMPDMEVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

TYK13123.1 RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo var. makuwa]1.1e-2572.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS++NGNKD+PTFDGMPDMEVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

XP_008439881.1 PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo]1.1e-2572.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS++NGNKD+PTFDGMPDMEVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

XP_038881741.1 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Benincasa hispida]1.4e-2571.59Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMKV
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS+SNGNKDMPTFDG+PD+EVDRRMK+
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMKV

XP_038881742.1 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X2 [Benincasa hispida]1.9e-2572.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS+SNGNKDMPTFDG+PD+EVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

TrEMBL top hitse value%identityAlignment
A0A0A0KLF7 Protein-serine/threonine phosphatase1.2e-2572.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    D VNDIPSPPDVSN+LVSEDEYS++NGNKDMPTFDGMPDMEVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

A0A1S3B0I7 Protein-serine/threonine phosphatase5.3e-2672.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS++NGNKD+PTFDGMPDMEVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

A0A5A7UGR2 Protein-serine/threonine phosphatase5.3e-2672.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS++NGNKD+PTFDGMPDMEVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

A0A5D3CMH4 Protein-serine/threonine phosphatase5.3e-2672.41Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSEDEYS++NGNKD+PTFDGMPDMEVDRRMK
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

A0A6J1KNP9 Protein-serine/threonine phosphatase5.5e-2366.67Show/hide
Query:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        GNNA+PVLCVARNVACNVRG                    D  NDIPSPPDVSN+LVSEDEYS+SNGNKDM TFDGMPDM+V+RR+K
Subjt:  GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

SwissProt top hitse value%identityAlignment
Q5YDB5 RNA polymerase II C-terminal domain phosphatase-like 27.5e-0940.66Show/hide
Query:  IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH
        +P LCVARNVACNVRG                    D V ++P  PDVSN++V ED    SNGN + P   +GM   EV+RR+       H
Subjt:  IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH

Q5YDB6 RNA polymerase II C-terminal domain phosphatase-like 13.1e-1553.57Show/hide
Query:  AIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        A PVLCVARNVAC VRG                    +   DIPSPPDVS++LVSED+ S  NGNKD  +FDGM D EV+RR+K
Subjt:  AIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

Arabidopsis top hitse value%identityAlignment
AT4G21670.1 C-terminal domain phosphatase-like 12.2e-1653.57Show/hide
Query:  AIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK
        A PVLCVARNVAC VRG                    +   DIPSPPDVS++LVSED+ S  NGNKD  +FDGM D EV+RR+K
Subjt:  AIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMK

AT5G01270.1 carboxyl-terminal domain (ctd) phosphatase-like 25.3e-1040.66Show/hide
Query:  IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH
        +P LCVARNVACNVRG                    D V ++P  PDVSN++V ED    SNGN + P   +GM   EV+RR+       H
Subjt:  IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH

AT5G01270.2 carboxyl-terminal domain (ctd) phosphatase-like 25.3e-1040.66Show/hide
Query:  IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH
        +P LCVARNVACNVRG                    D V ++P  PDVSN++V ED    SNGN + P   +GM   EV+RR+       H
Subjt:  IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTT
TCTCGTCTCAGAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGA
TCGGTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTT
TCTCGTCTCAGAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGA
TCGGTCACTGATTGAGGTCATAAGTAAACTTTCATTAGCATATACCAGGGAACTAATTAGGTCAAG
Protein sequenceShow/hide protein sequence
MHGNNAIPVLCVARNVACNVRGDGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMKVLTKIGH