CuGenDBv2

Gene ID	Lsi09G016500
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	serine/arginine repetitive matrix protein 1
Genome location	chr09:24815638..24816126
RNA-Seq Expression	Lsi09G016500
Synteny	Lsi09G016500
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008459744.1 PREDICTED: uncharacterized protein LOC103498786 [Cucumis melo]

2.3e-52

75.3

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAASSTSPSPS R LPITT PP   PVS  YAKS PP+ DAENT PNNS TIKSFGHKILSAVNSP P+SL    NQTTPK +SQPE  QISGSDVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKKEENDA-----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEP
        LQKAAAVKEKNRT+QVKEKKK++ +        S+MNHRVRPLKIK DWGL+LTQLEKRL E+SEP
Subjt:  LQKAAAVKEKNRTRQVKEKKKEENDA-----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEP

XP_011656857.1 uncharacterized protein LOC105435778 [Cucumis sativus]

5.8e-48

72.29

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAASSTSP PSC  L ITT  P TPP+S   A SQP  TDAEN  PNNSS+IK FGHKILSAVNSP PKSL    NQTTPK +S PE  QISGSDVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKKEENDA----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
        LQKAAAVKEK RT+QVKEKKK++  A      S+MNHRVRPLKI  DWGL+LTQLEKRL EIS+PV
Subjt:  LQKAAAVKEKNRTRQVKEKKKEENDA----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

XP_022959476.1 uncharacterized protein LOC111460438 [Cucurbita moschata]

3.1e-49

70.83

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MW A STSPSPSC  LP+ TRPP TPPVSA+YAK+QPP TDA+N TPNNS++IKSFGHKILSA NS NPKS +P       KQ+SQ ET QISG DVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
        LQKAAAVKEKNRTRQ KE+KK      E + ++NS+MN RVRPL+IK+DWGL+LT+LEKRLQEISE V
Subjt:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

XP_023006674.1 uncharacterized protein LOC111499329 [Cucurbita maxima]

2.6e-48

70.83

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAA STSPSPSC  LP+ TRP  TPPVSA+YAK+QPP TDA+N TPNNSS+IKSFGHKILSA  S NPKS +P       KQ+SQ ET +ISG DVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
        LQKAAAVKEKNRTRQVKE+KK      E + ++NS+MN RVRPL+IK+DWGL+LT+LEKRLQEISE V
Subjt:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

XP_038906928.1 uncharacterized protein LOC120092795 [Benincasa hispida]

1.5e-59

79.27

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAASST P+PSC  LPI TRP  TPPVSA+YA+SQPP+TDA NTTPN+SS+IKSFGHKILSAVNSPNPKSLNP PN+TTPKQ++QPE  QISGSD+LRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKKE--ENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
        LQKAAAVKEKNRTRQVK KKKE    +  +S+MNHRVRPLKIK DWGL+L+QLEKRLQE SEPV
Subjt:  LQKAAAVKEKNRTRQVKEKKKE--ENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCJ8 Uncharacterized protein

2.8e-48

72.29

Show/hide

Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAASSTSP PSC  L ITT  P TPP+S   A SQP  TDAEN  PNNSS+IK FGHKILSAVNSP PKSL    NQTTPK +S PE  QISGSDVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKKEENDA----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
        LQKAAAVKEK RT+QVKEKKK++  A      S+MNHRVRPLKI  DWGL+LTQLEKRL EIS+PV
Subjt:  LQKAAAVKEKNRTRQVKEKKKEENDA----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

A0A1S3CAW4 uncharacterized protein LOC103498786

1.1e-52

75.3

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAASSTSPSPS R LPITT PP   PVS  YAKS PP+ DAENT PNNS TIKSFGHKILSAVNSP P+SL    NQTTPK +SQPE  QISGSDVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKKEENDA-----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEP
        LQKAAAVKEKNRT+QVKEKKK++ +        S+MNHRVRPLKIK DWGL+LTQLEKRL E+SEP
Subjt:  LQKAAAVKEKNRTRQVKEKKKEENDA-----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEP

A0A5D3DMB8 Chaperone ClpB

1.1e-52

75.3

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAASSTSPSPS R LPITT PP   PVS  YAKS PP+ DAENT PNNS TIKSFGHKILSAVNSP P+SL    NQTTPK +SQPE  QISGSDVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKKEENDA-----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEP
        LQKAAAVKEKNRT+QVKEKKK++ +        S+MNHRVRPLKIK DWGL+LTQLEKRL E+SEP
Subjt:  LQKAAAVKEKNRTRQVKEKKKEENDA-----ENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEP

A0A6J1H4Y8 uncharacterized protein LOC111460438

1.5e-49

70.83

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MW A STSPSPSC  LP+ TRPP TPPVSA+YAK+QPP TDA+N TPNNS++IKSFGHKILSA NS NPKS +P       KQ+SQ ET QISG DVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
        LQKAAAVKEKNRTRQ KE+KK      E + ++NS+MN RVRPL+IK+DWGL+LT+LEKRLQEISE V
Subjt:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

A0A6J1L2U1 uncharacterized protein LOC111499329

1.3e-48

70.83

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Query:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA
        MWAA STSPSPSC  LP+ TRP  TPPVSA+YAK+QPP TDA+N TPNNSS+IKSFGHKILSA  S NPKS +P       KQ+SQ ET +ISG DVLRA
Subjt:  MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRA

Query:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV
        LQKAAAVKEKNRTRQVKE+KK      E + ++NS+MN RVRPL+IK+DWGL+LT+LEKRLQEISE V
Subjt:  LQKAAAVKEKNRTRQVKEKKK------EENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G46735.1 unknown protein

3.8e-05

32.03

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Query:  PPVSAVYAKSQPPRTDAEN---------TTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEKNRTRQV
        P V+   A SQPP  + +          T    S ++   G +IL        ++++ NP +  PK+      T+ISGSDVL A+Q+A A  ++ RT   
Subjt:  PPVSAVYAKSQPPRTDAEN---------TTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEKNRTRQV

Query:  KEKKKE------------ENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQE
        K+K K             E   +N      V PL+IKSDWG +L + EK L+E
Subjt:  KEKKKE------------ENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQE

Sequences

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CDS sequence

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ATGTGGGCTGCCTCCTCCACCTCACCAAGCCCGTCCTGCCGCTGCCTCCCGATCACAACCAGGCCACCTTCGACACCTCCGGTCTCCGCCGTCTACGCAAAGTCCCAGCC
ACCCAGAACCGACGCCGAAAACACCACACCAAACAACAGTAGCACCATCAAAAGCTTTGGCCACAAAATTCTCTCAGCCGTGAACTCCCCAAATCCCAAATCCCTAAACC
CCAACCCAAACCAAACGACCCCAAAACAGAAATCGCAACCGGAGACTACCCAAATTAGTGGCTCCGATGTCCTGAGGGCGCTGCAGAAGGCGGCTGCTGTGAAAGAGAAG
AACAGAACCCGACAAGTTAAAGAGAAGAAGAAAGAAGAGAACGACGCTGAGAATTCTGATATGAATCATAGAGTGAGGCCTCTGAAGATCAAGAGCGATTGGGGATTGAA
GCTCACCCAATTGGAAAAACGCCTTCAGGAAATCTCTGAGCCGGTTTGA

mRNA sequence

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Protein sequence

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MWAASSTSPSPSCRCLPITTRPPSTPPVSAVYAKSQPPRTDAENTTPNNSSTIKSFGHKILSAVNSPNPKSLNPNPNQTTPKQKSQPETTQISGSDVLRALQKAAAVKEK
NRTRQVKEKKKEENDAENSDMNHRVRPLKIKSDWGLKLTQLEKRLQEISEPV

Lsi09G016500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome