; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G016930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G016930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRGG repeats nuclear RNA binding protein A-like
Genome locationchr09:25420053..25421244
RNA-Seq ExpressionLsi09G016930
SyntenyLsi09G016930
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR039764 - RNA binding protein HABP4/SERBP1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011066.1 RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma]2.1e-2296.61Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GSSISNVAAPSIEDPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

XP_022933028.1 RGG repeats nuclear RNA binding protein A-like isoform X1 [Cucurbita moschata]2.1e-2296.61Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GSSISNVAAPSIEDPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

XP_022933029.1 RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita moschata]2.1e-2296.61Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GSSISNVAAPSIEDPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

XP_023520984.1 RGG repeats nuclear RNA binding protein A-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-2296.61Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GSSISNVAAPSIEDPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

XP_023520985.1 RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita pepo subsp. pepo]2.1e-2296.61Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GSSISNVAAPSIEDPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

TrEMBL top hitse value%identityAlignment
A0A0A0K9Z4 HABP4_PAI-RBP1 domain-containing protein1.5e-2193.22Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPA+GERHYAPGGRGRGRGRGSRGGYSGS +SNVAAPSI DPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

A0A1S3CBH1 H/ACA ribonucleoprotein complex subunit 1-like3.8e-2294.92Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYSGSS+SNVAAPSIEDPGQFP LGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

A0A5A7TA33 H/ACA ribonucleoprotein complex subunit 1-like3.8e-2294.92Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYSGSS+SNVAAPSIEDPGQFP LGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

A0A6J1EYL1 RGG repeats nuclear RNA binding protein A-like isoform X21.0e-2296.61Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GSSISNVAAPSIEDPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

A0A6J1F3H7 RGG repeats nuclear RNA binding protein A-like isoform X11.0e-2296.61Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK
        SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GSSISNVAAPSIEDPGQFPTLGAK
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

SwissProt top hitse value%identityAlignment
O23523 RGG repeats nuclear RNA binding protein A8.8e-0853.23Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK
        ++SINEFL+PAEG  +Y  G  GRGRG   RGG S        N AAP+I D  QFP+LG K
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK

O23593 RGG repeats nuclear RNA binding protein B5.9e-0440Show/hide
Query:  SLSINEFLRPAEGERHYAP-----GGR-------------GRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLG
        SLSINEFL+PA+G+ +Y P     GGR             GR    G R    G + +    P+I D  QFPTLG
Subjt:  SLSINEFLRPAEGERHYAP-----GGR-------------GRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLG

Q9LVT8 RGG repeats nuclear RNA binding protein C9.7e-0755.93Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGR-GRGSRG-GYSGSSISNVAAPSIEDPGQFPTLG
        SLSINEFL+PA+G+R+   GG  RGR GRG RG G +       AAP+I D  QFP+LG
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGR-GRGSRG-GYSGSSISNVAAPSIEDPGQFPTLG

Q9SQ56 RGG repeats nuclear RNA binding protein A (Fragment)9.4e-1064.41Show/hide
Query:  SINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISN--VAAPSIEDPGQFPTLGAK
        SINEFL+PAEGE +   GGRGRG GRG RGG+ G    N   +APSIED GQFP+L AK
Subjt:  SINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISN--VAAPSIEDPGQFPTLGAK

Arabidopsis top hitse value%identityAlignment
AT4G16830.1 Hyaluronan / mRNA binding family6.3e-0953.23Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK
        ++SINEFL+PAEG  +Y  G  GRGRG   RGG S        N AAP+I D  QFP+LG K
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK

AT4G16830.2 Hyaluronan / mRNA binding family6.3e-0953.23Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK
        ++SINEFL+PAEG  +Y  G  GRGRG   RGG S        N AAP+I D  QFP+LG K
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK

AT4G16830.3 Hyaluronan / mRNA binding family6.3e-0953.23Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK
        ++SINEFL+PAEG  +Y  G  GRGRG   RGG S        N AAP+I D  QFP+LG K
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLGAK

AT4G17520.1 Hyaluronan / mRNA binding family4.2e-0540Show/hide
Query:  SLSINEFLRPAEGERHYAP-----GGR-------------GRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLG
        SLSINEFL+PA+G+ +Y P     GGR             GR    G R    G + +    P+I D  QFPTLG
Subjt:  SLSINEFLRPAEGERHYAP-----GGR-------------GRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLG

AT5G47210.1 Hyaluronan / mRNA binding family6.9e-0855.93Show/hide
Query:  SLSINEFLRPAEGERHYAPGGRGRGR-GRGSRG-GYSGSSISNVAAPSIEDPGQFPTLG
        SLSINEFL+PA+G+R+   GG  RGR GRG RG G +       AAP+I D  QFP+LG
Subjt:  SLSINEFLRPAEGERHYAPGGRGRGR-GRGSRG-GYSGSSISNVAAPSIEDPGQFPTLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGTTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATA
CAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGTTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATA
CAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA
Protein sequenceShow/hide protein sequence
MASSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK