; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G016970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G016970
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlycine--tRNA ligase
Genome locationchr09:25476990..25482159
RNA-Seq ExpressionLsi09G016970
SyntenyLsi09G016970
Gene Ontology termsGO:0006426 - glycyl-tRNA aminoacylation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0004820 - glycine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002310 - Glycine-tRNA ligase, alpha subunit
IPR006194 - Glycine-tRNA synthetase, heterodimeric


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013827.1 Glycine--tRNA ligase, chloroplastic/mitochondrial 2, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

XP_008459797.1 PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucumis melo]8.5e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

XP_022973888.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita maxima]8.5e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

XP_023520987.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita pepo subsp. pepo]8.5e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

XP_038874261.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Benincasa hispida]8.5e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

TrEMBL top hitse value%identityAlignment
A0A0A0KFM2 Glycine--tRNA ligase4.1e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

A0A1S3CB07 Glycine--tRNA ligase4.1e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

A0A660KQ62 Glycine--tRNA ligase5.4e-5796.36Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCA+MQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFI+SLSALGIDV+AHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESPASS
        EDNWESPA S
Subjt:  EDNWESPASS

A0A6J1EYL5 Glycine--tRNA ligase4.1e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

A0A6J1IEH3 Glycine--tRNA ligase4.1e-57100Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

SwissProt top hitse value%identityAlignment
A1VCW8 Glycine--tRNA ligase alpha subunit1.4e-4173.58Show/hide
Query:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE
        YWAS GC + Q  + E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQ + QFQVILKP P N Q+L++ SL ALGID AAHDIRFVE
Subjt:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE

Query:  DNWESP
        D+WESP
Subjt:  DNWESP

B8DPG0 Glycine--tRNA ligase alpha subunit8.0e-4272.64Show/hide
Query:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE
        +WA  GC +MQ  + E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQ + QFQVILKP P N QD+++ SL ALGID AAHDIRFVE
Subjt:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE

Query:  DNWESP
        D+WESP
Subjt:  DNWESP

B8IZ95 Glycine--tRNA ligase alpha subunit3.6e-4273.58Show/hide
Query:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE
        YWA  GC + Q S  E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQR+ QFQVI+KP P N QDL++QSL+ALGI+ A HDIRFVE
Subjt:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE

Query:  DNWESP
        D+WESP
Subjt:  DNWESP

Q72AU2 Glycine--tRNA ligase alpha subunit1.4e-4173.58Show/hide
Query:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE
        YWAS GC + Q  + E GAGT NP TFLRV+GPEPWNVAYVEPS RP D RYGENPNRLQ + QFQVILKP P N Q+L++ SL ALGID AAHDIRFVE
Subjt:  YWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFVE

Query:  DNWESP
        D+WESP
Subjt:  DNWESP

Q8L785 Glycine--tRNA ligase, chloroplastic/mitochondrial 25.7e-5695.33Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQ SNTEVGAGTMNP TFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALGIDV AHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP

Arabidopsis top hitse value%identityAlignment
AT3G48110.1 glycine-tRNA ligases4.1e-5795.33Show/hide
Query:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV
        EYWASVGCAVMQ SNTEVGAGTMNP TFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALGIDV AHDIRFV
Subjt:  EYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVAAHDIRFV

Query:  EDNWESP
        EDNWESP
Subjt:  EDNWESP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGATATATGATAGTACTGTTTCCTCTGCCCATAATAATCATCGTTTGGAATACTGGGCCTCTGTTGGATGTGCTGTGATGCAATGCAGTAACACAGAGGTTGG
TGCAGGAACCATGAATCCCTTGACATTCTTAAGAGTTCTTGGTCCAGAACCTTGGAATGTTGCGTATGTGGAGCCTAGTATACGGCCAGATGATAGTCGCTATGGGGAAA
ATCCAAATAGACTCCAACGCCACACTCAATTTCAGGTGATTTTGAAGCCTGATCCTGGAAATTCACAAGACCTTTTCATCCAAAGTCTCTCCGCTTTAGGAATTGATGTT
GCTGCACATGATATACGTTTTGTAGAGGACAATTGGGAGAGTCCGGCATCTAGTTTCCTTGTCATTGGTTTGAACTCTACTTGTGCATTGGACTTGCCACTTGTTTTTTT
CACTTCTCTTAGAAAACTTATCCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGATATATGATAGTACTGTTTCCTCTGCCCATAATAATCATCGTTTGGAATACTGGGCCTCTGTTGGATGTGCTGTGATGCAATGCAGTAACACAGAGGTTGG
TGCAGGAACCATGAATCCCTTGACATTCTTAAGAGTTCTTGGTCCAGAACCTTGGAATGTTGCGTATGTGGAGCCTAGTATACGGCCAGATGATAGTCGCTATGGGGAAA
ATCCAAATAGACTCCAACGCCACACTCAATTTCAGGTGATTTTGAAGCCTGATCCTGGAAATTCACAAGACCTTTTCATCCAAAGTCTCTCCGCTTTAGGAATTGATGTT
GCTGCACATGATATACGTTTTGTAGAGGACAATTGGGAGAGTCCGGCATCTAGTTTCCTTGTCATTGGTTTGAACTCTACTTGTGCATTGGACTTGCCACTTGTTTTTTT
CACTTCTCTTAGAAAACTTATCCGTTAA
Protein sequenceShow/hide protein sequence
MVVIYDSTVSSAHNNHRLEYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDV
AAHDIRFVEDNWESPASSFLVIGLNSTCALDLPLVFFTSLRKLIR