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Lsi09G017120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G017120
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHTH myb-type domain-containing protein
Genome locationchr09:25666612..25678777
RNA-Seq ExpressionLsi09G017120
SyntenyLsi09G017120
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2725731.1 hypothetical protein I3760_01G080300 [Carya illinoinensis]2.4e-2458.97Show/hide
Query:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT
        ++FV+PVA  RGFEAA                +  +TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EHIGT
Subjt:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT

Query:  KTAVQIRSHAQKFFSKI
        KTAVQIRSHAQKFFSK+
Subjt:  KTAVQIRSHAQKFFSKI

KAG6730487.1 hypothetical protein I3842_01G082600 [Carya illinoinensis]2.4e-2458.97Show/hide
Query:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT
        ++FV+PVA  RGFEAA                +  +TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EHIGT
Subjt:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT

Query:  KTAVQIRSHAQKFFSKI
        KTAVQIRSHAQKFFSK+
Subjt:  KTAVQIRSHAQKFFSKI

KAG6748283.1 hypothetical protein POTOM_048200 [Populus tomentosa]2.1e-2357.48Show/hide
Query:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEG-------CILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKILTQLRKLKAPT
        +TRKPYTITKQRERWTEEEH+RFLEALKLYGRAWQRIEG       CIL+      L  V       EHIGTKTAVQIRSHAQKFFSK +  L+  K   
Subjt:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEG-------CILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKILTQLRKLKAPT

Query:  DSGQP--SLLDDNDLSEHPSMLISTPY
          G P    LD +     P    S PY
Subjt:  DSGQP--SLLDDNDLSEHPSMLISTPY

XP_042983071.1 protein LATE ELONGATED HYPOCOTYL-like isoform X1 [Carya illinoinensis]2.4e-2458.97Show/hide
Query:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT
        ++FV+PVA  RGFEAA                +  +TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EHIGT
Subjt:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT

Query:  KTAVQIRSHAQKFFSKI
        KTAVQIRSHAQKFFSK+
Subjt:  KTAVQIRSHAQKFFSKI

XP_042983111.1 protein LATE ELONGATED HYPOCOTYL-like isoform X2 [Carya illinoinensis]1.4e-2453.57Show/hide
Query:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT
        ++FV+PVA  RGFEAA                +  +TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EHIGT
Subjt:  EVFVLPVARSRGFEAA----------------VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT

Query:  KTAVQIRSHAQKFFSKILTQLRKLKAPTDSGQPSLLDDND
        KTAVQIRSHAQKFFSK        K   D  Q +  DD D
Subjt:  KTAVQIRSHAQKFFSKILTQLRKLKAPTDSGQPSLLDDND

TrEMBL top hitse value%identityAlignment
A0A1U8ENN1 protein LHY isoform X16.5e-2356.1Show/hide
Query:  VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKILTQLRKLKAPTDSGQ
        +  +TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE          +L F       LEHIGTKTAVQIRSHAQKFF+K    ++  K     G 
Subjt:  VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKILTQLRKLKAPTDSGQ

Query:  P--SLLDDNDLSEHPSMLISTPY
        P    LD       P    S PY
Subjt:  P--SLLDDNDLSEHPSMLISTPY

A0A2N9I3T0 HTH myb-type domain-containing protein2.9e-2359.83Show/hide
Query:  VFVLPVARSRGFEAAVAA-----------------QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT
        VFV  VA SRGFEAA+ A                 + RKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EHIGT
Subjt:  VFVLPVARSRGFEAAVAA-----------------QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGT

Query:  KTAVQIRSHAQKFFSKI
        KTAVQIRSHAQKFFSK+
Subjt:  KTAVQIRSHAQKFFSKI

A0A2P5WJF9 HTH myb-type domain-containing protein1.1e-2273.17Show/hide
Query:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        +TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEG               +L   L+HIGTKTAVQIRSHAQKFFSK+
Subjt:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

A0A7J8M641 HTH myb-type domain-containing protein (Fragment)2.9e-2375.61Show/hide
Query:  TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKIL
        TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEG         F  F H     L+HIGTKTAVQIRSHAQKFFSK++
Subjt:  TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKIL

A0A803NSJ3 Uncharacterized protein3.1e-2573.33Show/hide
Query:  GFEAAVAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        GFEAA AAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EHIGTKTAVQIRSHAQKFFSK+
Subjt:  GFEAAVAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

SwissProt top hitse value%identityAlignment
A0A0G3VTN5 Protein LATE ELONGATED HYPOCOTYL2.8e-2367.06Show/hide
Query:  VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        +  +TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Subjt:  VAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

F4K5X6 Protein REVEILLE 22.9e-2060.98Show/hide
Query:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        +TRKPYTITKQRE+WTE EH +F+EALKLYGRAW+RIE                      EH+GTKTAVQIRSHAQKFF+K+
Subjt:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

F4KGY6 Protein REVEILLE 12.9e-2059.52Show/hide
Query:  AAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        A + RKPYTITK+RERWT+EEH +F+EALKLYGRAW+RIE                      EH+G+KTAVQIRSHAQKFFSK+
Subjt:  AAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

P92973 Protein CCA16.9e-2264.63Show/hide
Query:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        +TRKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IE                      EH+ TKTAVQIRSHAQKFFSK+
Subjt:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

Q6R0H1 Protein LHY1.2e-2165.06Show/hide
Query:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        A+ RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Subjt:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

Arabidopsis top hitse value%identityAlignment
AT1G01060.1 Homeodomain-like superfamily protein8.4e-2365.06Show/hide
Query:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        A+ RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Subjt:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

AT1G01060.2 Homeodomain-like superfamily protein8.4e-2365.06Show/hide
Query:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        A+ RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Subjt:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

AT1G01060.3 Homeodomain-like superfamily protein8.4e-2365.06Show/hide
Query:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        A+ RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Subjt:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

AT1G01060.4 Homeodomain-like superfamily protein8.4e-2365.06Show/hide
Query:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        A+ RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIE                      EHIGTKTAVQIRSHAQKFF+K+
Subjt:  AQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI

AT2G46830.1 circadian clock associated 14.9e-2364.63Show/hide
Query:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI
        +TRKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IE                      EH+ TKTAVQIRSHAQKFFSK+
Subjt:  QTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGAGGTTTTCGTTTTACCCGTTGCTCGTTCGAGAGGATTTGAAGCAGCGGTAGCTGCTCAGACCAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTG
GACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGGTTGTATTTTGATCAAATGTCAGCATTCCTTTTTGACTT
TTGTTCATTTCTTAGCTTGTAACCTTGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAGATTCTTACGCAATTACGCAAG
CTAAAGGCACCTACAGATAGTGGCCAACCATCCTTGCTTGATGATAACGACTTATCTGAACATCCCTCCATGCTCATATCAACCCCATATTGGATAAACCATCTTGGGGA
ACCTTCATTCTGTGAGAAGGAGAACAATGCTGTTGAATTTGGGCATTTTTCTTGGTTCATGGGTGGCAAGCCAACTAGTGTGCTCAACTTCTGCCAAGGGTGGAGAAGAG
TTGAACACCATGCCCTGCATTTTAAGTGCCTTGGTCACCTTCAAGAATTTTTGACCCAGTTGAGATACAAGGGTTGTGACACTCTTCCTTCAGCTCCCCAGGCTAATCCT
CACACATTTCCCCGCAATGATCAGACTTTTTTCCAGCTTATGAGAGGATGGTTGAAGAAAGAAAAGTTGGAATGTCGTGTTCCCTATCTTAGAAGATGCATGAATTACGC
TCCAACCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAGAGGTTTTCGTTTTACCCGTTGCTCGTTCGAGAGGATTTGAAGCAGCGGTAGCTGCTCAGACCAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTG
GACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGGTTGTATTTTGATCAAATGTCAGCATTCCTTTTTGACTT
TTGTTCATTTCTTAGCTTGTAACCTTGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAGATTCTTACGCAATTACGCAAG
CTAAAGGCACCTACAGATAGTGGCCAACCATCCTTGCTTGATGATAACGACTTATCTGAACATCCCTCCATGCTCATATCAACCCCATATTGGATAAACCATCTTGGGGA
ACCTTCATTCTGTGAGAAGGAGAACAATGCTGTTGAATTTGGGCATTTTTCTTGGTTCATGGGTGGCAAGCCAACTAGTGTGCTCAACTTCTGCCAAGGGTGGAGAAGAG
TTGAACACCATGCCCTGCATTTTAAGTGCCTTGGTCACCTTCAAGAATTTTTGACCCAGTTGAGATACAAGGGTTGTGACACTCTTCCTTCAGCTCCCCAGGCTAATCCT
CACACATTTCCCCGCAATGATCAGACTTTTTTCCAGCTTATGAGAGGATGGTTGAAGAAAGAAAAGTTGGAATGTCGTGTTCCCTATCTTAGAAGATGCATGAATTACGC
TCCAACCAAATAG
Protein sequenceShow/hide protein sequence
MDGEVFVLPVARSRGFEAAVAAQTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGCILIKCQHSFLTFVHFLACNLEHIGTKTAVQIRSHAQKFFSKILTQLRK
LKAPTDSGQPSLLDDNDLSEHPSMLISTPYWINHLGEPSFCEKENNAVEFGHFSWFMGGKPTSVLNFCQGWRRVEHHALHFKCLGHLQEFLTQLRYKGCDTLPSAPQANP
HTFPRNDQTFFQLMRGWLKKEKLECRVPYLRRCMNYAPTK