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Lsi09G017180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G017180
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionreactive Intermediate Deaminase A, chloroplastic-like
Genome locationchr09:25718226..25728484
RNA-Seq ExpressionLsi09G017180
SyntenyLsi09G017180
Gene Ontology termsGO:1901565 - organonitrogen compound catabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0019239 - deaminase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033977.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-1392.86Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
XP_004152932.1 reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus]1.6e-1395.24Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCAARTFHMPAFDVTALRSK+PLAVGVGC SVAGTTLWRS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
XP_008463412.1 PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo]4.8e-1392.86Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
XP_022942433.1 reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata]7.6e-1188.1Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
XP_038903207.1 reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida]1.9e-14100Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
TrEMBL top hitse value%identityAlignment
A0A0A0L2Z6 Uncharacterized protein7.9e-1495.24Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCAARTFHMPAFDVTALRSK+PLAVGVGC SVAGTTLWRS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
A0A1S3CJ54 reactive Intermediate Deaminase A, chloroplastic-like2.3e-1392.86Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
A0A5D3BWR3 Retrotransposon protein2.3e-1392.86Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
A0A6J1FUT7 reactive Intermediate Deaminase A, chloroplastic3.7e-1188.1Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
A0A6J1IN69 reactive Intermediate Deaminase A, chloroplastic1.1e-1085.71Show/hide
Query:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
        MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTT  RS
Subjt:  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGGTGTGCGGCTCGGACCTTTCACATGCCGGCGTTTGACGTCACTGCACTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGCGCTTCGGTGGCCGGAAC
CACCTTGTGGCGATCTTNTATTGGTTTCGAAACTTGGAATGCCTTAGATTCACTGTTTTTTCTTCCTTGTGTCACTAATATTAACAAACACTTCTCATTGCCATCTCTGC
TTTTTATAGAAGCCCTCCATTTTATTAAAAAAACGTTGTATGGTATTATAATTCAAAGGGAGGGAGAGACAGAGAGACTAAATCCTAGACTTCCTGTACAGATTCAGTTA
TCTTTGCGTGATGGAATAGTTTTCGACCTTGTCGTTCTCAATCCTGCAACATTCGCCGATGACGATCAGAAATTCATATGTATTGTTATTGTCCATGATGCGAGGACACC
AAAATATGCTATTGGTTCCCAGAATGAAAATTCAAAACAATCAACTGTACAGATTTTATCCAACAATGTTCCAAGACCAGAATGCCAGGTGGAATTCACTTTTTCTAGGA
AGACGTCCAAGCCGGAAATTGTTAATCGTTCCAAAATCTCCATCATGCCAAATGGGAAATGCATCATTGAGCACATTTGTTCGCTTCAACAATTCCAAGTGTGCTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTGGTGTGCGGCTCGGACCTTTCACATGCCGGCGTTTGACGTCACTGCACTGCGCTCCAAGACTCCCTTAGCCGTCGGCGTCGGTTGCGCTTCGGTGGCCGGAAC
CACCTTGTGGCGATCTTNTATTGGTTTCGAAACTTGGAATGCCTTAGATTCACTGTTTTTTCTTCCTTGTGTCACTAATATTAACAAACACTTCTCATTGCCATCTCTGC
TTTTTATAGAAGCCCTCCATTTTATTAAAAAAACGTTGTATGGTATTATAATTCAAAGGGAGGGAGAGACAGAGAGACTAAATCCTAGACTTCCTGTACAGATTCAGTTA
TCTTTGCGTGATGGAATAGTTTTCGACCTTGTCGTTCTCAATCCTGCAACATTCGCCGATGACGATCAGAAATTCATATGTATTGTTATTGTCCATGATGCGAGGACACC
AAAATATGCTATTGGTTCCCAGAATGAAAATTCAAAACAATCAACTGTACAGATTTTATCCAACAATGTTCCAAGACCAGAATGCCAGGTGGAATTCACTTTTTCTAGGA
AGACGTCCAAGCCGGAAATTGTTAATCGTTCCAAAATCTCCATCATGCCAAATGGGAAATGCATCATTGAGCACATTTGTTCGCTTCAACAATTCCAAGTGTGCTTGTGA
Protein sequenceShow/hide protein sequence
MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSXIGFETWNALDSLFFLPCVTNINKHFSLPSLLFIEALHFIKKTLYGIIIQREGETERLNPRLPVQIQL
SLRDGIVFDLVVLNPATFADDDQKFICIVIVHDARTPKYAIGSQNENSKQSTVQILSNNVPRPECQVEFTFSRKTSKPEIVNRSKISIMPNGKCIIEHICSLQQFQVCL