CuGenDBv2

Gene ID	Lsi09G017240
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Genome location	chr09:25830835..25831290
RNA-Seq Expression	Lsi09G017240
Synteny	Lsi09G017240
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014655.1 hypothetical protein SDJN02_24834, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.3e-57

84.83

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        MSRP+QDPQSG  HEISSLLLKILRSPPPPVPF+DHVLELSSAISSSS    PSSQ++P GFAALLLGISLALMLCGSVTFFLGFMLMPWILV VMIFY+
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHGEFLISFCFLVFIEIDF
        VGIVS++SMLGRS+LCCFTAPTPRKDFHGEFL   CFLVFI   F
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHGEFLISFCFLVFIEIDF

XP_004151234.1 uncharacterized protein LOC101208751 [Cucumis sativus]

9.1e-56

92.25

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M   RQDP+SG+F+EISSLLLKILRSPPPPVPFSDHVLELSSAI+SSSSRILPSSQ+TPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG
        VGIVS+LSMLGRSL+CCFTAPTPRKDFHG
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG

XP_008459845.1 PREDICTED: uncharacterized protein LOC103498845 [Cucumis melo]

9.1e-56

91.47

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M+  +QDP+SG+FHEISSLLLKILRSPPPPVPFSDHVLELSS ISSSSSRILPSSQ+TPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG
        VGIVS+LS+LGRSL+CCFTAPTPRKDFHG
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG

XP_022155438.1 uncharacterized protein LOC111022584 isoform X1 [Momordica charantia]

1.8e-51

85.5

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M RPR+DPQS + HEISSLL+KILRSPPPPVPFSDHVLELSS ISSSS  +LPSSQITPAG A+LLLGISLALMLCGSVTFFLGF+LMPWILVLVMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHGEF
        VGIVS+LSMLGRS+LCCF+APTPRKDF+ +F
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHGEF

XP_038875874.1 uncharacterized protein LOC120068233 [Benincasa hispida]

8.5e-54

91.47

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M+RP+Q PQSG+F+EISSLLLKILRSPPPPVPFSDHVLELSSAISSSS  ILPSSQ+TPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILV VMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG
         GIVS+LSMLGRSLLCCFTAPTPRKDFHG
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDL5 Uncharacterized protein

4.4e-56

92.25

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M   RQDP+SG+F+EISSLLLKILRSPPPPVPFSDHVLELSSAI+SSSSRILPSSQ+TPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG
        VGIVS+LSMLGRSL+CCFTAPTPRKDFHG
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG

A0A1S3CB48 uncharacterized protein LOC103498845

4.4e-56

91.47

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M+  +QDP+SG+FHEISSLLLKILRSPPPPVPFSDHVLELSS ISSSSSRILPSSQ+TPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG
        VGIVS+LS+LGRSL+CCFTAPTPRKDFHG
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG

A0A6J1DMY8 uncharacterized protein LOC111022584 isoform X1

8.6e-52

85.5

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M RPR+DPQS + HEISSLL+KILRSPPPPVPFSDHVLELSS ISSSS  +LPSSQITPAG A+LLLGISLALMLCGSVTFFLGF+LMPWILVLVMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHGEF
        VGIVS+LSMLGRS+LCCF+APTPRKDF+ +F
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHGEF

A0A6J1DPD1 uncharacterized protein LOC111022584 isoform X4

1.5e-51

86.82

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        M RPR+DPQS + HEISSLL+KILRSPPPPVPFSDHVLELSS ISSSS  +LPSSQITPAG A+LLLGISLALMLCGSVTFFLGF+LMPWILVLVMIFYV
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG
        VGIVS+LSMLGRS+LCCF+APTPRKDF+G
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFHG

A0A6J1JW24 uncharacterized protein LOC111488035

7.3e-51

86.72

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV
        MSRP+QDPQSG  HEISSLLLKILRSPPPPVPF+DHVLELSSAISSSS    PSSQ++P GF ALLLGISLALMLCGSVTFFLGFMLMPWILV VMIFY+
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYV

Query:  VGIVSTLSMLGRSLLCCFTAPTPRKDFH
        VGIVS++SMLGRS+LCCFTAPTPRKDFH
Subjt:  VGIVSTLSMLGRSLLCCFTAPTPRKDFH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G27290.1 unknown protein

7.8e-29

54.62

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISS--SSSRILPSS----QITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVL
        M R R + QS +F+++SSL+L +LRSPP P+   DH  +  + I    SS R   SS     I+P+GFA+LLLGIS+ALMLCGSVTFF+GF+LMPW+L L
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISS--SSSRILPSS----QITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVL

Query:  VMIFYVVGIVSTLSMLGRSLLC-CFTAPTP
        +++FYV GIVS +SM+GRS+LC   T P+P
Subjt:  VMIFYVVGIVSTLSMLGRSLLC-CFTAPTP

AT1G27290.2 unknown protein

7.8e-29

54.62

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Query:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISS--SSSRILPSS----QITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVL
        M R R + QS +F+++SSL+L +LRSPP P+   DH  +  + I    SS R   SS     I+P+GFA+LLLGIS+ALMLCGSVTFF+GF+LMPW+L L
Subjt:  MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISS--SSSRILPSS----QITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVL

Query:  VMIFYVVGIVSTLSMLGRSLLC-CFTAPTP
        +++FYV GIVS +SM+GRS+LC   T P+P
Subjt:  VMIFYVVGIVSTLSMLGRSLLC-CFTAPTP

Sequences

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CDS sequence

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ATGAGTAGGCCTCGACAAGATCCCCAATCTGGGATTTTTCATGAGATTTCGTCTCTGCTTTTGAAAATTCTACGATCGCCGCCACCTCCTGTCCCTTTTTCCGATCATGT
TTTGGAATTATCTTCCGCTATTTCGTCGTCGTCGTCGAGAATTTTGCCTTCCTCTCAGATTACCCCAGCTGGATTTGCGGCTTTGCTTTTGGGGATTTCGTTGGCTTTGA
TGCTTTGTGGATCGGTTACTTTCTTCCTTGGCTTCATGTTGATGCCTTGGATTCTCGTTTTGGTGATGATTTTTTATGTGGTTGGGATCGTCTCTACCCTCTCTATGTTG
GGACGCTCTTTACTTTGTTGTTTCACCGCTCCAACGCCTCGGAAAGATTTTCATGGCGAGTTTCTTATCTCCTTCTGTTTCCTTGTTTTTATTGAAATTGATTTTTTGCT
TCATTTCCTTATCTGA

mRNA sequence

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Protein sequence

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MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSML
GRSLLCCFTAPTPRKDFHGEFLISFCFLVFIEIDFLLHFLI

Lsi09G017240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome