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Lsi09G017270 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G017270
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor, MADS-box
Genome locationchr09:25878192..25878383
RNA-Seq ExpressionLsi09G017270
SyntenyLsi09G017270
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576135.1 Agamous-like MADS-box protein MADS4, partial [Cucurbita argyrosperma subsp. sororia]9.2e-2693.55Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR
        MGRKKIEVK IEDRCNRH+TFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSGNR
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR

KAG6592961.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2491.94Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR
        MGRKKIE+K IED CNRH+TFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG+R
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR

KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-2693.55Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR
        MGRKKIEVK IEDRCNRH+TFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSGNR
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNR

XP_008459847.1 PREDICTED: MADS-box transcription factor 8-like [Cucumis melo]2.0e-2591.8Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIEVKLIEDRCNRH+TFCKRRSGL+KKARELSVLCDVEVG+++FTNRGRLYEFCSGN
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

XP_023514717.1 MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]3.5e-2593.44Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIEVK IEDRCNRH+TFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSGN
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

TrEMBL top hitse value%identityAlignment
A0A1S3CCC5 MADS-box transcription factor 8-like9.9e-2691.8Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIEVKLIEDRCNRH+TFCKRRSGL+KKARELSVLCDVEVG+++FTNRGRLYEFCSGN
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X17.1e-2488.52Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIEVK IED CNRH+TFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X37.1e-2488.52Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIEVK IED CNRH+TFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC GN
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like2.4e-2491.8Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIE+K IED CNRH+TFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG+
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

A0A6J1KPU7 MADS-box protein 04g005320-like3.2e-2490.16Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGRKKIE+K IED CNRH+TFCKRRSGLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG+
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

SwissProt top hitse value%identityAlignment
O04067 Agamous-like MADS-box protein AGL9 homolog5.6e-1863.93Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

Q03489 Agamous-like MADS-box protein AGL9 homolog5.6e-1863.93Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

Q38836 Agamous-like MADS-box protein AGL115.6e-1867.21Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR KIE+K IE+  NR +TFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + N
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

Q39685 MADS-box protein CMB15.6e-1867.8Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

Q9SAR1 MADS-box transcription factor 81.5e-1866.67Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCSG
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein4.0e-1963.93Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

AT1G24260.2 K-box region and MADS-box transcription factor family protein4.0e-1963.93Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

AT1G24260.3 K-box region and MADS-box transcription factor family protein4.0e-1963.93Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS +
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN

AT3G02310.1 K-box region and MADS-box transcription factor family protein4.0e-1967.8Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++E+K IE++ NR +TF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

AT4G09960.2 K-box region and MADS-box transcription factor family protein4.0e-1967.21Show/hide
Query:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN
        MGR KIE+K IE+  NR +TFCKRR+GL+KKA ELSVLCD EV L+VF+ RGRLYE+ + N
Subjt:  MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGT
TCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGACGGAAGAAGATCGAGGTGAAGCTAATCGAAGATAGGTGTAATCGCCATATCACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCGCGAGAGCTCTCTGT
TCTTTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAATCGCGGCCGTCTCTATGAGTTTTGCAGCGGAAATAGGTACTGA
Protein sequenceShow/hide protein sequence
MGRKKIEVKLIEDRCNRHITFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGNRY