; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G017400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G017400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr09:26040487..26040960
RNA-Seq ExpressionLsi09G017400
SyntenyLsi09G017400
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576125.1 hypothetical protein SDJN03_26764, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3981.03Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG
        MSGVTLAVAPRTDPNDAV     APQ KPLRRQQQ++N+VVGGVMGSLRVIELQLVAFIMVFSASGLVP LDL+FPAFTSAYLLLLARFAFPSHGH S  
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG

Query:  SQEIFQARTLIAISFV
        SQEIFQ   L  +  V
Subjt:  SQEIFQARTLIAISFV

KAG7014643.1 hypothetical protein SDJN02_24822, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-3986.92Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG
        MSGVTLAVAPRTDPNDAV     APQ KPLRRQQQ++N+VVGGVMGSLRVIELQLVAFIMVFSASGLVP LDL+FPAFTSAYLLLLARFAFPSHGH S  
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG

Query:  SQEIFQA
        SQEIFQA
Subjt:  SQEIFQA

XP_022954375.1 uncharacterized protein LOC111456631 [Cucurbita moschata]4.6e-3981.03Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG
        MSGVTLAVAPRTDPNDAV     APQ KPLRRQQQ++N+VVGGVMGSLRVIELQLVAFIMVFSASGLVP LDL+FPAFTSAYLLLLARFAFPSHGH S  
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG

Query:  SQEIFQARTLIAISFV
        SQEIFQ   L  +  V
Subjt:  SQEIFQARTLIAISFV

XP_023550142.1 uncharacterized protein LOC111808420 [Cucurbita pepo subsp. pepo]1.0e-3881.03Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG
        MSGVTLAVAPRTDPNDAV     APQQKPL RQQQ++N+VVGGVMGSLRVIELQLVAFIMVFSASGLVP LDL+FPAFTSAYLLLLARFAFPSHGH S  
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG

Query:  SQEIFQARTLIAISFV
        SQEIFQ   L  +  V
Subjt:  SQEIFQARTLIAISFV

XP_038875679.1 uncharacterized protein LOC120068074 [Benincasa hispida]5.8e-4287.93Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG
        MSGVTLAVAPRTDPNDA+APELK P QKPLRRQQQQ NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGH S G
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG

Query:  SQEIFQARTLIAISFV
        SQEIFQ   L  +  V
Subjt:  SQEIFQARTLIAISFV

TrEMBL top hitse value%identityAlignment
A0A0A0KAF1 Uncharacterized protein4.6e-3779.83Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQ--KPLRRQQQQE-NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHE
        MSGVTLA+ P TD NDA  PELK  QQ   PLR+Q QQE NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGH 
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQ--KPLRRQQQQE-NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHE

Query:  SAGSQEIFQARTLIAISFV
        S  S EIFQA TL  +  V
Subjt:  SAGSQEIFQARTLIAISFV

A0A1S3CB68 uncharacterized protein LOC1034988611.1e-3578.99Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQ--KPLRRQQQQE-NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHE
        MSGV+LAV PRT+ NDA   ELK  QQ   PLRRQ QQE N+VVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGH 
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQ--KPLRRQQQQE-NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHE

Query:  SAGSQEIFQARTLIAISFV
        S GS EIFQ  TL  +  V
Subjt:  SAGSQEIFQARTLIAISFV

A0A5D3DMD1 Uncharacterized protein9.6e-3578.15Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQ--KPLRRQQQQE-NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHE
        MSGV+LAV PRT+ NDA   ELK  QQ   PLRRQ QQE N+VVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHG  
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQ--KPLRRQQQQE-NTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHE

Query:  SAGSQEIFQARTLIAISFV
        S GS EIFQ  TL  +  V
Subjt:  SAGSQEIFQARTLIAISFV

A0A6J1GS90 uncharacterized protein LOC1114566312.2e-3981.03Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG
        MSGVTLAVAPRTDPNDAV     APQ KPLRRQQQ++N+VVGGVMGSLRVIELQLVAFIMVFSASGLVP LDL+FPAFTSAYLLLLARFAFPSHGH S  
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG

Query:  SQEIFQARTLIAISFV
        SQEIFQ   L  +  V
Subjt:  SQEIFQARTLIAISFV

A0A6J1JUQ0 uncharacterized protein LOC1114880271.4e-3881.03Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG
        MSGVTLAVAPRTDPNDAV      PQQKPLRRQQQ++NTVVGGVMGSLRVIELQLVAFIMVFSASGLVP LDL FPAFTSAYLLLLARFAFPS GH S  
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAG

Query:  SQEIFQARTLIAISFV
        SQEIFQ   L  +  V
Subjt:  SQEIFQARTLIAISFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27990.1 unknown protein1.3e-2051.28Show/hide
Query:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVV----GGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGH
        MSGV+LAV PRTD +   +   K          +    T +    GG+MGSLRVIELQLVAFI+VFSASGLVP LD++FPAF S Y++ L+R AFPSHG 
Subjt:  MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVV----GGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGH

Query:  ESAGSQEIFQARTLIAI
         S  S E+F+   L  +
Subjt:  ESAGSQEIFQARTLIAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGTGTAACTCTTGCGGTGGCTCCACGAACGGACCCGAATGATGCGGTGGCGCCGGAGCTGAAGGCGCCACAGCAGAAGCCGCTACGGCGACAACAACAACAGGA
GAACACCGTTGTTGGAGGCGTTATGGGATCTCTACGCGTAATTGAACTCCAACTTGTTGCTTTCATCATGGTTTTCTCTGCCAGCGGCCTCGTCCCGTTTCTCGACCTTG
TTTTCCCTGCGTTTACGTCCGCCTACCTTCTTTTGCTGGCACGCTTCGCTTTCCCGTCTCACGGCCACGAGTCGGCCGGGTCGCAGGAGATCTTTCAGGCAAGGACTCTT
ATCGCTATAAGTTTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGTGTAACTCTTGCGGTGGCTCCACGAACGGACCCGAATGATGCGGTGGCGCCGGAGCTGAAGGCGCCACAGCAGAAGCCGCTACGGCGACAACAACAACAGGA
GAACACCGTTGTTGGAGGCGTTATGGGATCTCTACGCGTAATTGAACTCCAACTTGTTGCTTTCATCATGGTTTTCTCTGCCAGCGGCCTCGTCCCGTTTCTCGACCTTG
TTTTCCCTGCGTTTACGTCCGCCTACCTTCTTTTGCTGGCACGCTTCGCTTTCCCGTCTCACGGCCACGAGTCGGCCGGGTCGCAGGAGATCTTTCAGGCAAGGACTCTT
ATCGCTATAAGTTTTGTTTGA
Protein sequenceShow/hide protein sequence
MSGVTLAVAPRTDPNDAVAPELKAPQQKPLRRQQQQENTVVGGVMGSLRVIELQLVAFIMVFSASGLVPFLDLVFPAFTSAYLLLLARFAFPSHGHESAGSQEIFQARTL
IAISFV